kellylab / viral-protein-function-plmLinks
Viral protein family functional prediction using protein language models
☆19Updated last year
Alternatives and similar repositories for viral-protein-function-plm
Users that are interested in viral-protein-function-plm are comparing it to the libraries listed below
Sorting:
- Detection of phage RBPs based on protein domains and machine learning☆23Updated 4 months ago
- Local version of the virus identification and analysis web server (tool set)☆54Updated last month
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆21Updated 3 months ago
- The viral taxonomic assignment pipeline☆24Updated 3 months ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆61Updated 6 months ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆68Updated last month
- VirBot: a protein-based RNA virus detector for metagenomic data☆30Updated 10 months ago
- Pipeline for major biological analyses.☆35Updated 3 years ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.☆10Updated last year
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆40Updated 5 months ago
- A workflow and scripts for large-scale antiSMASH analyses☆41Updated 2 months ago
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆36Updated last year
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated last month
- PhaTYP: Predicting lifestyle for bacteriophages using BERT☆13Updated 7 months ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆34Updated last year
- ☆32Updated 3 months ago
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆13Updated 2 months ago
- ☆34Updated 2 months ago
- Unified Human Gut Virome Catalog☆31Updated 10 months ago
- PHANOTATE: a gene caller for phages.☆76Updated 6 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆41Updated 7 months ago
- ☆18Updated 4 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆34Updated 3 years ago
- VIRIDIC (Virus Intergenomic Distance Calculator) computes pairwise intergenomic distances/similarities amongst viral genomes.☆15Updated last year
- ☆30Updated 5 months ago
- Exploring the "dusk matter" of the RNA virosphere☆35Updated 3 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated 11 months ago
- ☆15Updated last year
- ☆32Updated last year