Alternatives and similar repositories for viral-protein-function-plm:

Users that are interested in viral-protein-function-plm are comparing it to the libraries listed below

• dimiboeckaerts / PhageRBPdetection
  Detection of phage RBPs based on protein domains and machine learning
  ☆22Updated 2 weeks ago
• XiaofangJ / PhaseFinder
  A pipeline to computationally identify invertible DNA regions and quantify their orientations.
  ☆29Updated last year
• RyanCook94 / inphared
  Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.
  ☆67Updated last month
• apcamargo / ictv-mmseqs2-protein-database
  ☆28Updated this week
• gem-pasteur / macsyfinder
  MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.
  ☆57Updated 2 months ago
• GreyGuoweiChen / VirBot
  VirBot: a protein-based RNA virus detector for metagenomic data
  ☆29Updated 6 months ago
• nselem / corason
  Bioinformatic Tools for study Evolution of metabolic diversity
  ☆31Updated 11 months ago
• ZiyueYang01 / VirID
  VirID: An integrated platform for the discovery and characterization of RNA Viruses
  ☆18Updated this week
• KennthShang / PhaTYP
  PhaTYP: Predicting lifestyle for bacteriophages using BERT
  ☆13Updated 3 months ago
• Kalan-Lab / lsaBGC
  lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters
  ☆37Updated 6 months ago
• snayfach / UHGV
  Unified Human Gut Virome Catalog
  ☆27Updated 7 months ago
• JustineCharon / RdRp-scan
  Exploring the "dusk matter" of the RNA virosphere
  ☆35Updated 2 years ago
• cultivarium / GenomeSPOT
  Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome
  ☆45Updated last month
• cjneely10 / MetaSanity
  Pipeline for major biological analyses.
  ☆34Updated 2 years ago
• Orin-beep / HOTSPOT
  HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.
  ☆10Updated 10 months ago
• NBChub / bgcflow
  Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)
  ☆39Updated last month
• apcamargo / taxopy
  A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers
  ☆44Updated 2 weeks ago
• KennthShang / PhaBOX
  Local version of the virus identification and analysis web server (tool set)
  ☆42Updated last week
• zreitz / multismash
  A workflow and scripts for large-scale antiSMASH analyses
  ☆34Updated 2 months ago
• EBI-Metagenomics / mettannotator
  ☆62Updated last month
• Finn-Lab / SanntiS
  SMBGC Annotation using Neural Networks Trained on Interpro Signatures
  ☆24Updated this week
• KennthShang / PhaGCN2.0
  ☆33Updated last month
• michaelkyu / PlasX
  PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture
  ☆32Updated 3 years ago
• michaelkyu / MobMess
  ☆19Updated 3 years ago
• soedinglab / WIsH
  Predict prokaryotic host for phage metagenomic sequences
  ☆52Updated 5 months ago
• PAiewsakun / GRAViTy
  ☆17Updated 2 years ago
• CristinaMoraru / VIRIDIC
  VIRIDIC (Virus Intergenomic Distance Calculator) computes pairwise intergenomic distances/similarities amongst viral genomes.
  ☆14Updated last year
• deprekate / PHANOTATE
  PHANOTATE: a tool to annotate phage genomes.
  ☆72Updated 2 months ago
• kelwyres / Bactabolize
  ☆38Updated 2 months ago
• adamhockenberry / bacphlip
  A python library for predicting phage lifestyle based on genome sequence
  ☆35Updated last year