kellylab / viral-protein-function-plmLinks
Viral protein family functional prediction using protein language models
☆21Updated last month
Alternatives and similar repositories for viral-protein-function-plm
Users that are interested in viral-protein-function-plm are comparing it to the libraries listed below
Sorting:
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆78Updated 9 months ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆72Updated last month
- ☆35Updated 7 months ago
- The viral taxonomic assignment pipeline☆42Updated last week
- PhaTYP: Predicting lifestyle for bacteriophages using BERT☆15Updated last year
- Detection of phage RBPs based on protein domains and machine learning☆30Updated last year
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆32Updated 2 years ago
- Supporting code for uncultivated gut virus manuscript☆78Updated 2 years ago
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆15Updated 4 years ago
- Unified Human Gut Virome Catalog☆41Updated 3 months ago
- Locate antiviral defence systems in prokaryotic genomes☆67Updated last year
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆41Updated 4 months ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆39Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆40Updated 4 years ago
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆58Updated 8 months ago
- Find clustered hits from a BLAST search☆132Updated 3 weeks ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆82Updated 5 months ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆67Updated 10 months ago
- Binning Virus Genomes from Metagenomes☆70Updated 3 years ago
- ☆34Updated 4 months ago
- ☆66Updated last year
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆52Updated last year
- ☆33Updated last year
- VirHostMatcher: matching hosts of viruses based on oligonucleotide frequency (ONF) comparison☆31Updated 7 years ago
- ☆32Updated last year
- Pipeline for major biological analyses.☆36Updated 3 years ago
- Systematic search of all known anti-phage systems.☆144Updated 3 weeks ago
- VirHostMatcher-Net: A network-based computational tool for predicting virus-host interactions.☆19Updated 4 years ago
- Phage Annotation using Protein Structures☆148Updated last week
- ☆63Updated last year