Viral protein family functional prediction using protein language models
☆23Jan 6, 2026Updated 4 months ago
Alternatives and similar repositories for viral-protein-function-plm
Users that are interested in viral-protein-function-plm are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Nov 29, 2023Updated 2 years ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Dec 16, 2024Updated last year
- ☆38Dec 6, 2023Updated 2 years ago
- Systematic search of all known anti-phage systems.☆168May 5, 2026Updated 2 weeks ago
- Prokaryotic virus Host Predictor (PHP) is a computational tool for host prediction of prokaryotic viruses based on Gaussian Model (GM). P…☆12Jan 8, 2021Updated 5 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆52Oct 12, 2023Updated 2 years ago
- multiPhATE with comparative genomics☆18Jun 14, 2021Updated 4 years ago
- viral Host UnveiLing Kit (vHULK)☆14May 15, 2025Updated last year
- Prophage Activity Estimator☆33May 30, 2024Updated last year
- Predict prokaryotic host for phage metagenomic sequences☆56Sep 17, 2024Updated last year
- Phage-Host Interaction Search Tool☆30Jul 8, 2024Updated last year
- Published in PLOS ONE. Phage-host interaction prediction tool that uses protein language models to represent the receptor-binding protein…☆17Jul 13, 2025Updated 10 months ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆73Dec 1, 2025Updated 5 months ago
- VirHostMatcher-Net: A network-based computational tool for predicting virus-host interactions.☆19Mar 8, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆84Sep 8, 2025Updated 8 months ago
- Host prediction for phages☆27Nov 6, 2024Updated last year
- A python library for predicting phage lifestyle based on genome sequence☆41Aug 9, 2023Updated 2 years ago
- ☆34Oct 6, 2025Updated 7 months ago
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆60Jun 4, 2025Updated 11 months ago
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆23Nov 24, 2025Updated 6 months ago
- ☆21Nov 17, 2022Updated 3 years ago
- A simple program to classify the lifestyle of phages.☆17May 22, 2023Updated 3 years ago
- Genome-informed, trait-based dynamic energy budget modeling of microbes with ML analysis of emergent strategies☆19Feb 18, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Instantaneous Metagenome Taxonomic Profiling with MetaKSSD☆24Nov 3, 2025Updated 6 months ago
- fast phage annotation program☆210Apr 21, 2026Updated last month
- Genomic sequence aligner☆33May 17, 2026Updated last week
- ☆26Jun 20, 2023Updated 2 years ago
- CLANS_2 is a Python-based program for clustering sequences in the 2D or 3D space, based on their sequence similarities. CLANS visualizes …☆26Dec 5, 2024Updated last year
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆39Dec 20, 2024Updated last year
- ☆14Mar 12, 2026Updated 2 months ago
- Step-wise assembly of the neonatal virome modulated by breast feeding.☆11Aug 20, 2021Updated 4 years ago
- MetaWIBELE: Workflow to Identify novel Bioactive Elements in microbiome☆23Nov 25, 2025Updated 6 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆15Oct 14, 2023Updated 2 years ago
- ViralCC: leveraging metagenomic proximity-ligation to retrieve complete viral genomes☆18Feb 3, 2026Updated 3 months ago
- Virus Protein Structural Analysis Toolkit☆13Sep 9, 2024Updated last year
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆44Apr 4, 2023Updated 3 years ago
- Code for de novo discovery of viral families in virome data☆16Jun 20, 2024Updated last year
- ☆13Feb 29, 2024Updated 2 years ago
- The viral taxonomic assignment pipeline☆44Apr 16, 2026Updated last month