kellylab / viral-protein-function-plm
Viral protein family functional prediction using protein language models
☆18Updated 9 months ago
Alternatives and similar repositories for viral-protein-function-plm:
Users that are interested in viral-protein-function-plm are comparing it to the libraries listed below
- Detection of phage RBPs based on protein domains and machine learning☆22Updated last month
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- ☆29Updated last month
- PhaTYP: Predicting lifestyle for bacteriophages using BERT☆13Updated 4 months ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆59Updated 3 months ago
- ☆34Updated 2 weeks ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆67Updated 2 months ago
- HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.☆10Updated 11 months ago
- VirBot: a protein-based RNA virus detector for metagenomic data☆30Updated 7 months ago
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆34Updated last year
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆41Updated 3 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆33Updated 3 years ago
- Unified Human Gut Virome Catalog☆27Updated 8 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated this week
- Local version of the virus identification and analysis web server (tool set)☆44Updated 2 weeks ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆46Updated last month
- Pipeline for major biological analyses.☆34Updated 2 years ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆31Updated last year
- ☆26Updated 11 months ago
- Virus Identification☆18Updated 2 months ago
- A workflow and scripts for large-scale antiSMASH analyses☆37Updated 3 months ago
- ☆31Updated last year
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 3 years ago
- ☆19Updated 3 years ago
- A python library for predicting phage lifestyle based on genome sequence☆36Updated last year
- ☆10Updated 2 weeks ago
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆18Updated last month
- ☆27Updated 2 months ago
- Locate antiviral defence systems in prokaryotic genomes☆52Updated 5 months ago
- PHANOTATE: a tool to annotate phage genomes.☆72Updated 3 months ago