kellylab / viral-protein-function-plm
Viral protein family functional prediction using protein language models
☆18Updated 5 months ago
Related projects ⓘ
Alternatives and complementary repositories for viral-protein-function-plm
- VirBot: a protein-based RNA virus detector for metagenomic data☆28Updated 3 months ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆27Updated 10 months ago
- ☆29Updated 3 weeks ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆51Updated this week
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆61Updated last week
- ☆35Updated 2 weeks ago
- ☆25Updated 7 months ago
- PhaTYP: Predicting lifestyle for bacteriophages using BERT☆13Updated 2 weeks ago
- ☆48Updated 8 months ago
- Local version of the virus identification and analysis web server (tool set)☆36Updated this week
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 3 months ago
- Pipeline for major biological analyses.☆34Updated 2 years ago
- A python library for predicting phage lifestyle based on genome sequence☆35Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆46Updated 4 months ago
- Predict prokaryotic host for phage metagenomic sequences☆52Updated 2 months ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆30Updated 8 months ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆67Updated 2 months ago
- A workflow and scripts for large-scale antiSMASH analyses☆30Updated 2 weeks ago
- Prophage Activity Estimator☆26Updated 5 months ago
- ☆57Updated this week
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆61Updated 3 months ago
- Binning Virus Genomes from Metagenomes☆58Updated 2 years ago
- ☆24Updated 2 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆49Updated this week
- ☆36Updated 11 months ago
- ☆38Updated 8 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆36Updated last month
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆19Updated 3 years ago
- ☆23Updated 9 months ago
- Exploring the "dusk matter" of the RNA virosphere☆35Updated 2 years ago