multiPhATE with comparative genomics
☆18Jun 14, 2021Updated 4 years ago
Alternatives and similar repositories for multiPhATE2
Users that are interested in multiPhATE2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Throughput PhATE processing of draft or finished phage genomes☆14Apr 19, 2021Updated 5 years ago
- PHANOTATE: a gene caller for phages.☆87Dec 2, 2024Updated last year
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Nov 29, 2023Updated 2 years ago
- Detection of phage RBPs based on protein domains and machine learning☆33Feb 5, 2025Updated last year
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆82Apr 16, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.☆50Jul 12, 2022Updated 3 years ago
- ☆38Dec 6, 2023Updated 2 years ago
- Viral protein family functional prediction using protein language models☆23Jan 6, 2026Updated 4 months ago
- Predict prokaryotic host for phage metagenomic sequences☆56Sep 17, 2024Updated last year
- metagenome population recombination rate estimation pipeline☆12Nov 23, 2025Updated 6 months ago
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆52Oct 12, 2023Updated 2 years ago
- This is the official site for JASPER (Jellyfish based Assembly Sequence Polisher for Error Reduction)☆12Jun 27, 2024Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated last year
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆39Dec 20, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Prokaryotic virus Host Predictor (PHP) is a computational tool for host prediction of prokaryotic viruses based on Gaussian Model (GM). P…☆12Jan 8, 2021Updated 5 years ago
- ☆17May 26, 2022Updated 3 years ago
- VirHostMatcher-Net: A network-based computational tool for predicting virus-host interactions.☆19Mar 8, 2026Updated 2 months ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆16Mar 5, 2026Updated 2 months ago
- Virus Identification By iteRative ANnoTation☆195Apr 15, 2024Updated 2 years ago
- Assort phage protein sequences into phamilies using MMseqs2☆12Dec 16, 2024Updated last year
- Pairwise machine learning models for phage-host interaction prediction☆21Jun 23, 2024Updated last year
- ☆15Oct 14, 2023Updated 2 years ago
- fast phage annotation program☆210Apr 21, 2026Updated last month
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Identify short variants and structural variants from raw sequencing data or genomic sequences☆36Mar 27, 2024Updated 2 years ago
- ☆11Sep 16, 2020Updated 5 years ago
- ☆11Dec 9, 2022Updated 3 years ago
- a comparative genome browser for bacteriophages☆21May 13, 2026Updated last week
- Learn Julia in one workday!☆13Jan 7, 2020Updated 6 years ago
- Virus Protein Family tools☆31Jul 20, 2022Updated 3 years ago
- Detection of the structural, evolutionary and functional relationship between different proteins and protein families requires comparativ…☆15Sep 22, 2023Updated 2 years ago
- SUPBUB is a tool that, in linear time, finds out superbubbles(special graph-structures) in a directed graph.☆12Sep 19, 2019Updated 6 years ago
- A deletion finder through re-aligning the whole soft-clipping read☆12Jul 2, 2016Updated 9 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆11Aug 2, 2025Updated 9 months ago
- ☆12Aug 23, 2023Updated 2 years ago
- Computation of average nucleotide identity with the use of MMseqs2☆24Dec 11, 2024Updated last year
- ☆11Jul 3, 2022Updated 3 years ago
- A tool for identifying active prophage elements through read mapping☆13Oct 9, 2023Updated 2 years ago
- Header-only, gzread-like reader for gzip, bz2, and xz.☆11Aug 8, 2018Updated 7 years ago
- For bluntifying overlapped GFAs☆13Jul 26, 2024Updated last year