Alternatives and similar repositories for multiPhATE2:

Users that are interested in multiPhATE2 are comparing it to the libraries listed below

• AlexanderLabWHOI / EUKulele
  Automatic eukaryotic taxonomic classification
  ☆28Updated 2 weeks ago
• motu-tool / fetchMGs.pl
  ☆16Updated 4 years ago
• lmlui / Jorg
  MAG Circularization Method
  ☆33Updated 2 years ago
• tseemann / berokka
  🍊 💫 Trim, circularise and orient long read bacterial genome assemblies
  ☆26Updated 5 years ago
• leylabmpi / SynTracker
  SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…
  ☆29Updated 3 months ago
• functional-dark-side / agnostos-wf
  ☆45Updated last year
• Magdoll / MagPhase
  Phasing for metagenomics using PacBio long reads
  ☆17Updated 3 years ago
• chrisquince / STRONG
  Strain Resolution ON Graphs
  ☆47Updated last year
• tseemann / scapper
  Whole genome core alignments from multiple draft genomes
  ☆13Updated 8 years ago
• aweimann / traitar
  ☆22Updated 2 years ago
• dib-lab / charcoal
  Remove contaminated contigs from genomes using k-mers and taxonomies.
  ☆56Updated last year
• metasnv-tool / metaSNV
  MetaSNV, a metagenomic SNV calling pipeline.
  ☆20Updated 3 years ago
• WatsonLab / KOunt
  Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.
  ☆24Updated 7 months ago
• statdivlab / happi
  A Hierarchical Approach to Pangenomics Inference
  ☆11Updated last year
• bacpop / CELEBRIMBOR
  Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs
  ☆23Updated 9 months ago
• flass / pantagruel
  a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome
  ☆48Updated 2 years ago
• zheminzhou / SPARSE
  Strain Prediction and Analysis with Representative SEquence
  ☆18Updated 5 months ago
• alexmsalmeida / metamap
  Snakemake workflow to map and quantify microbial genomes in metagenomic reads
  ☆12Updated last year
• Arkadiy-Garber / SprayNPray
  Rapid and simple taxonomic profiling of genome and metagenome contigs
  ☆28Updated last year
• broadinstitute / StrainGE
  strain-level analysis tools
  ☆36Updated 6 months ago
• leylabmpi / resmico
  Identifying misassemblies via deep learning
  ☆11Updated last year
• KasperSkytte / mmgenome2
  Tools for extracting individual genomes from metagenomes
  ☆17Updated last year
• kevsilva / StrainFLAIR
  Strain-level abundances estimation in metagenomic samples using variation graphs
  ☆25Updated 2 years ago
• tseemann / seeka
  Get microbial sequence data easier and faster
  ☆28Updated 5 years ago
• stajichlab / AAFTF
  Automatic Assembly For The Fungi
  ☆20Updated 3 months ago
• xinehc / melon
  Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes
  ☆35Updated last week
• Microbiology / ccontigs
  Detect contigs of complete circular genomes
  ☆23Updated 5 years ago
• Shamir-Lab / SCAPP
  SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…
  ☆31Updated 2 years ago
• iferres / pagoo
  A comprehensive and intuitive encapsulated OO class system for analyzing bacterial pangenomes in R.
  ☆28Updated 2 years ago
• mdsufz / OrtSuite
  Prediction of microbial interactions in complex communities
  ☆12Updated 8 months ago