carolzhou / multiPhATE2Links
multiPhATE with comparative genomics
☆19Updated 4 years ago
Alternatives and similar repositories for multiPhATE2
Users that are interested in multiPhATE2 are comparing it to the libraries listed below
Sorting:
- ☆45Updated 2 years ago
- Strain Prediction and Analysis with Representative SEquence☆19Updated 6 months ago
- Automatic eukaryotic taxonomic classification☆29Updated last month
- ☆23Updated 2 years ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 3 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆31Updated 4 months ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆57Updated last year
- MAG Circularization Method☆33Updated 3 years ago
- A Hierarchical Approach to Pangenomics Inference☆11Updated last year
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 3 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- ☆16Updated 5 years ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 3 years ago
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆24Updated 8 months ago
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆12Updated last year
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆63Updated 3 months ago
- Build a map of genes present across a set of microbial genomes☆14Updated this week
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆13Updated 3 years ago
- Strain Resolution ON Graphs☆48Updated last year
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated 11 months ago
- Bacterial GWAS analysis☆40Updated last month
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆25Updated 2 months ago
- Three bacterial GWAS methods all rolled into one easy-to-use R package☆22Updated last year
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆45Updated last month
- CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.☆20Updated 7 months ago
- ☆22Updated 2 years ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆23Updated last week