carolzhou / multiPhATE2
multiPhATE with comparative genomics
☆18Updated 3 years ago
Alternatives and similar repositories for multiPhATE2:
Users that are interested in multiPhATE2 are comparing it to the libraries listed below
- Automatic eukaryotic taxonomic classification☆28Updated 3 months ago
- ☆44Updated last year
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆17Updated 4 months ago
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆24Updated 3 months ago
- MAG Circularization Method☆33Updated 2 years ago
- Whole genome core alignments from multiple draft genomes☆12Updated 8 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆25Updated 2 months ago
- ☆16Updated 4 years ago
- Quickly get the taxonomy of a genome☆10Updated last year
- Three bacterial GWAS methods all rolled into one easy-to-use R package☆19Updated 9 months ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 2 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆34Updated last month
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆46Updated 2 years ago
- strain-level analysis tools☆33Updated 2 months ago
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- Strain Resolution ON Graphs☆47Updated last year
- A Hierarchical Approach to Pangenomics Inference☆11Updated 9 months ago
- Bacterial genomes finishing tool for structural insights on draft genomes☆24Updated last year
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Automatic Assembly For The Fungi☆19Updated 3 weeks ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆25Updated 2 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆22Updated 5 months ago
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 2 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆55Updated last year
- Improvement of metagenome-assembled genomes☆50Updated 4 years ago
- mGEMS Genomic epidemiology with mixed samples☆16Updated 4 months ago
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- Strain Prediction and Analysis with Representative SEquence☆18Updated last month