lmrodriguezr / nonpareilLinks
Estimate metagenomic coverage and sequence diversity
☆56Updated last year
Alternatives and similar repositories for nonpareil
Users that are interested in nonpareil are comparing it to the libraries listed below
Sorting:
- a collection of scripts for organising bacterial genomes by species☆81Updated 3 years ago
- A toolbox for improving metagenome-assembled genomes.☆62Updated 4 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆45Updated 5 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆55Updated 6 months ago
- A tool for removing redundant genomes from a set of assemblies☆77Updated last month
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- GraftM - Rapid community profiles from metagenomes☆45Updated last year
- Prediction of prophages from bacterial genomes☆81Updated 4 months ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆74Updated 2 years ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆75Updated last year
- Identify phage regions in bacterial genomes for masking purposes☆34Updated 6 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆61Updated 6 years ago
- ☆24Updated 6 years ago
- Microbial Populations as Clusters Of Gene Transfer☆44Updated last year
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆51Updated this week
- ☆37Updated 3 years ago
- Tool to estimate genome quality of microbial eukaryotes☆38Updated 2 months ago
- ☆53Updated 3 months ago
- De novo Extraction of Strains from MetAgeNomes☆71Updated 5 years ago
- Split Kmer Analysis☆65Updated 3 years ago
- IS mapping software☆56Updated 3 years ago
- Bioinformatics tool to find integrons in bacterial genomes☆81Updated 5 months ago
- Taxonomic classification of viruses at Order and Family level☆21Updated 2 years ago
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆41Updated 4 years ago