lmrodriguezr / nonpareilView external linksLinks
Estimate metagenomic coverage and sequence diversity
☆59Dec 18, 2025Updated last month
Alternatives and similar repositories for nonpareil
Users that are interested in nonpareil are comparing it to the libraries listed below
Sorting:
- scripts for estimating bacteria replication rates based on population genome copy number variation☆73Dec 28, 2019Updated 6 years ago
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆49Oct 12, 2023Updated 2 years ago
- ☆63Feb 27, 2024Updated last year
- A toolbox for improving metagenome-assembled genomes.☆64Jun 2, 2021Updated 4 years ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24Updated this week
- ☆13Jan 20, 2016Updated 10 years ago
- Assessing and Improving the quality of metagenomic assemblies☆31Feb 21, 2022Updated 3 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Aug 22, 2024Updated last year
- ☆23May 8, 2023Updated 2 years ago
- viralVerify: viral contig verification tool☆74Aug 22, 2021Updated 4 years ago
- De novo Extraction of Strains from MetAgeNomes☆72Jun 17, 2020Updated 5 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Mar 25, 2022Updated 3 years ago
- A tool to classify sequences of plasmid or chromosomal origin. A paper describing this tool is available at: https://journals.plos.org/pl…☆32Jun 17, 2024Updated last year
- DAS Tool☆168May 2, 2024Updated last year
- Variational autoencoder for metagenomic binning☆317Feb 2, 2026Updated 2 weeks ago
- StrainEst - abundance estimation of strains☆20Jan 17, 2020Updated 6 years ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆20Nov 15, 2022Updated 3 years ago
- MetagenOmic read Re-Assigner and abundance quantifier☆20Jan 31, 2025Updated last year
- Classifier for metagenomic sequences☆270Jun 20, 2025Updated 7 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆290Feb 3, 2026Updated 2 weeks ago
- sensitive and precise assembly of short sequencing reads☆162Oct 11, 2024Updated last year
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆574Feb 9, 2026Updated last week
- ☆22Apr 20, 2023Updated 2 years ago
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆202Aug 25, 2025Updated 5 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆54Jul 3, 2024Updated last year
- Indexing & querying large assembly graphs -- in space, no one can hear you miao!☆118Jan 29, 2026Updated 2 weeks ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22May 14, 2023Updated 2 years ago
- code repo for mobileOG-db☆46Nov 6, 2025Updated 3 months ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆459Jul 28, 2023Updated 2 years ago
- Automatically exported from code.google.com/p/qsimscan☆14Oct 10, 2021Updated 4 years ago
- Searching large collections of sequencing data with genome-scale queries☆16Feb 5, 2026Updated last week
- SemiBin: metagenomics binning with self-supervised deep learning☆154Jan 23, 2026Updated 3 weeks ago
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.☆51Feb 8, 2022Updated 4 years ago
- k-SLAM ultra fast alignment and taxonomic classification of metagenomic datasets☆23Nov 18, 2018Updated 7 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Aug 23, 2023Updated 2 years ago
- Detect contigs of complete circular genomes☆23Jun 6, 2019Updated 6 years ago
- geNomad: Identification of mobile genetic elements☆289Nov 10, 2025Updated 3 months ago
- ☆14Oct 14, 2023Updated 2 years ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆251Mar 20, 2025Updated 10 months ago