geNomad: Identification of mobile genetic elements
☆329Mar 29, 2026Updated 5 months ago
Alternatives and similar repositories for genomad
Users that are interested in genomad are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Systematic search of all known anti-phage systems.☆184Updated this week
- Assessing the quality of metagenome-derived genome bins using machine learning☆276Mar 20, 2025Updated last year
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆317Feb 3, 2026Updated 6 months ago
- Pharokka is a rapid standardised annotation tool for bacteriophage genomes and metagenomes.☆227Aug 16, 2026Updated 2 weeks ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆298Nov 28, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Read alignment statistics for metagenomics☆405Jul 10, 2026Updated last month
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆263May 13, 2026Updated 3 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆671Aug 7, 2026Updated 3 weeks ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆235Jul 29, 2026Updated last month
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆339Aug 16, 2026Updated 2 weeks ago
- Phage Annotation using Protein Structures☆171Updated this week
- Rapid comparison and dereplication of genomes☆354Jul 16, 2026Updated last month
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆229May 9, 2026Updated 3 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆238Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆620May 20, 2026Updated 3 months ago
- An updated pipeline for pangenome investigation☆374Jul 2, 2026Updated 2 months ago
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆86Aug 24, 2026Updated last week
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆429May 20, 2026Updated 3 months ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆190Mar 17, 2026Updated 5 months ago
- SemiBin: metagenomics binning with self-supervised deep learning☆174Aug 3, 2026Updated 3 weeks ago
- A new high-resolution long-read metagenome assembler for even noisy reads☆167Jul 3, 2026Updated 2 months ago
- Virus Identification By iteRative ANnoTation☆203Apr 15, 2024Updated 2 years ago
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆226Aug 22, 2026Updated last week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Variational autoencoder for metagenomic binning☆331Apr 27, 2026Updated 4 months ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆111Jul 7, 2026Updated last month
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆92Dec 27, 2024Updated last year
- Locate antiviral defence systems in prokaryotic genomes☆78Oct 22, 2024Updated last year
- A hybrid assembly and MAG recovery pipeline (and more!)☆118Updated this week
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆76Aug 13, 2026Updated 3 weeks ago
- Binning Virus Genomes from Metagenomes☆76Jul 13, 2022Updated 4 years ago
- A comprehensive prokaryotic genome annotation pipeline☆91Aug 18, 2026Updated 2 weeks ago
- Precise host read removal☆129Apr 13, 2026Updated 4 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Discover and annotate the virome☆64Jun 10, 2026Updated 2 months ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆232Mar 24, 2026Updated 5 months ago
- Mass screening of contigs for antimicrobial and virulence genes☆507Jul 17, 2026Updated last month
- PlasMAAG is a tool to recover plasmids and organisms from metagenomic samples☆32Updated this week
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated 2 years ago
- Bioinformatics tool for Locus Visualisation☆171Mar 30, 2026Updated 5 months ago
- ☆116Aug 26, 2026Updated last week