Alternatives and similar repositories for genomad

Users that are interested in genomad are comparing it to the libraries listed below

• chklovski / CheckM2
  Assessing the quality of metagenome-derived genome bins using machine learning
  ☆211Updated 2 months ago
• gbouras13 / pharokka
  fast phage annotation program
  ☆163Updated 2 weeks ago
• rrwick / Autocycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆137Updated this week
• jiarong / VirSorter2
  customizable pipeline to identify viral sequences from (meta)genomic data
  ☆251Updated 6 months ago
• bluenote-1577 / sylph
  ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.
  ☆230Updated 2 months ago
• tseemann / mlst
  Scan contig files against PubMLST typing schemes
  ☆226Updated 2 years ago
• bhattlab / MGEfinder
  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
  ☆121Updated last year
• xiezhq / ISEScan
  A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome
  ☆95Updated last month
• MGXlab / CAT_pack
  CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…
  ☆212Updated last month
• linnabrown / run_dbcan
  Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…
  ☆149Updated last month
• rrwick / Perfect-bacterial-genome-tutorial
  ☆135Updated 11 months ago
• kblin / ncbi-acc-download
  Download files from NCBI Entrez by accession
  ☆123Updated 9 months ago
• cruizperez / MicrobeAnnotator
  Pipeline for metabolic annotation of microbial genomes
  ☆147Updated 2 months ago
• gbouras13 / hybracter
  Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.
  ☆127Updated 3 weeks ago
• phac-nml / mob-suite
  MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies
  ☆148Updated last month
• MrOlm / drep
  Rapid comparison and dereplication of genomes
  ☆294Updated last month
• wdecoster / chopper
  ☆194Updated last month
• hewm2008 / NGenomeSyn
  Any Way to Show Multi genomic Synteny
  ☆189Updated last month
• mdmparis / defense-finder
  Systematic search of all known anti-phage systems.
  ☆104Updated 3 months ago
• gtonkinhill / panaroo
  An updated pipeline for pangenome investigation
  ☆299Updated 3 months ago
• aineniamh / snipit
  snipit: summarise snps relative to your reference sequence
  ☆159Updated 3 weeks ago
• ncbi / egapx
  Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation
  ☆135Updated 2 months ago
• tseemann / barrnap
  Bacterial ribosomal RNA predictor
  ☆245Updated last year
• biobakery / phylophlan
  Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
  ☆144Updated last month
• jtlovell / GENESPACE
  ☆209Updated 4 months ago
• schneebergerlab / plotsr
  Tool to plot synteny and structural rearrangements between genomes
  ☆306Updated last month
• epi2me-labs / wf-metagenomics
  Metagenomic classification of long-read sequencing data
  ☆83Updated 3 weeks ago
• OpenGene / fastplong
  Ultra-fast preprocessing and quality control for long-read sequencing data
  ☆138Updated this week
• CAMI-challenge / CAMISIM
  CAMISIM: Simulating metagenomes and microbial communities
  ☆208Updated 9 months ago
• B-UMMI / chewBBACA
  BSR-Based Allele Calling Algorithm
  ☆145Updated last month