apcamargo / genomad
geNomad: Identification of mobile genetic elements
☆232Updated last month
Alternatives and similar repositories for genomad:
Users that are interested in genomad are comparing it to the libraries listed below
- fast phage annotation program☆161Updated 3 months ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆204Updated last month
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆144Updated 2 weeks ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆222Updated last month
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆94Updated 3 weeks ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆211Updated last week
- A tool for generating consensus long-read assemblies for bacterial genomes☆125Updated last week
- Scan contig files against PubMLST typing schemes☆223Updated 2 years ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆247Updated 5 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆117Updated last year
- Pipeline for metabolic annotation of microbial genomes☆145Updated last month
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆149Updated last week
- An updated pipeline for pangenome investigation☆296Updated 2 months ago
- ☆131Updated 10 months ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆141Updated 3 weeks ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆126Updated last month
- FunGAP: fungal Genome Annotation Pipeline☆111Updated last year
- Any Way to Show Multi genomic Synteny☆185Updated last week
- ☆185Updated last week
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆188Updated 2 months ago
- snipit: summarise snps relative to your reference sequence☆158Updated 3 months ago
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆133Updated last month
- Systematic search of all known anti-phage systems.☆97Updated 2 months ago
- Tool to plot synteny and structural rearrangements between genomes☆303Updated 3 weeks ago
- ☆206Updated 3 months ago
- BSR-Based Allele Calling Algorithm☆142Updated 2 weeks ago
- Pan-genome wide association studies☆193Updated 11 months ago
- Fast and accurately polish the genome generated by long reads.☆222Updated 3 months ago
- Rapid comparison and dereplication of genomes☆285Updated 3 weeks ago
- A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0☆202Updated this week