Aligning gene expression trajectories of single-cell reference and query systems
☆90Jul 28, 2026Updated last week
Alternatives and similar repositories for Genes2Genes
Users that are interested in Genes2Genes are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆68Apr 22, 2026Updated 3 months ago
- R package for generalized binary covariance decomposition.☆16Jul 13, 2025Updated last year
- ☆40Jun 24, 2025Updated last year
- Gene Expression Decomposition and Integration☆21Feb 9, 2026Updated 6 months ago
- R implementation of GeneTrajectory☆71May 9, 2026Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Non-parametric density inference for single-cell analysis.☆75Jul 28, 2026Updated last week
- Single-cell dubious embedding detector (scDED): a statistical method for detecting dubious non-linear embeddings☆51May 14, 2025Updated last year
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆89Mar 19, 2026Updated 4 months ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆264Jul 8, 2026Updated last month
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆37Apr 2, 2025Updated last year
- ☆58Mar 23, 2025Updated last year
- Python implementation of Gene Trajectory☆30Sep 4, 2024Updated last year
- Single-Cell Inference of Class Switch Recombination☆24Jun 19, 2026Updated last month
- python API to the CoGAPS NMF package☆22Jul 24, 2026Updated 2 weeks ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Feb 22, 2025Updated last year
- Learning meaningful representations of genes☆21Jul 7, 2025Updated last year
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Apr 20, 2024Updated 2 years ago
- Feature selection for preserving biological trajectories in single-cell data☆22Jun 24, 2026Updated last month
- scVI extension for unspliced RNA☆15May 18, 2025Updated last year
- trajectory inference☆109Jan 27, 2025Updated last year
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆70Jul 9, 2026Updated last month
- inferring regulatory cellular dynamics☆181Updated this week
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆194Mar 27, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆25Apr 16, 2026Updated 3 months ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆41Nov 10, 2025Updated 9 months ago
- cell type specific, trait-associated gene regulation☆30Updated this week
- ☆62Apr 5, 2024Updated 2 years ago
- ☆12Jan 8, 2026Updated 7 months ago
- A modular tool for proportion analysis in single-cell sequencing data☆28Feb 26, 2026Updated 5 months ago
- Genotype-Neighborhood Associations: A tool for identifying genetic variant associations to the abundance of cell states in single-cell d…☆18Oct 5, 2024Updated last year
- Implementation of MaSigPro for scRNA-Seq Data☆20Jul 31, 2024Updated 2 years ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆87Apr 21, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Direct estimation of mean and covariance from single cell RNA seq experiments☆136Jul 24, 2026Updated 2 weeks ago
- Gene group activity utility functions for Scanpy☆108Dec 21, 2024Updated last year
- Bayesian model for RNA velocity estimation of periodic manifolds☆35Jun 25, 2024Updated 2 years ago
- ☆17Jul 13, 2024Updated 2 years ago
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆57Jun 29, 2026Updated last month
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆88Mar 20, 2025Updated last year
- R and MATLAB scripts for MAGICAL☆12Jun 26, 2024Updated 2 years ago