Teichlab / Genes2GenesLinks
Aligning gene expression trajectories of single-cell reference and query systems
☆77Updated 3 months ago
Alternatives and similar repositories for Genes2Genes
Users that are interested in Genes2Genes are comparing it to the libraries listed below
Sorting:
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated last year
- Robust identification of perturbed cell types in single-cell RNA-seq data☆34Updated 3 weeks ago
- Functional Inference of Gene Regulation☆49Updated last year
- Functions for single cell data analysis☆32Updated 4 years ago
- R package for pathway analysis in scRNA-seq data☆76Updated last year
- Estimation of Single-Cell Potency with Single Cell Entropy☆43Updated 2 years ago
- R package for Protein activity analysis of single-cell RNAseq.☆85Updated 2 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆57Updated last week
- Accurate and fast cell marker gene identification with COSG☆53Updated last month
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆62Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆90Updated 5 months ago
- Analysis of cell-cell communication at single-cell resolution☆105Updated last year
- ☆59Updated 5 months ago
- Single cell RNA-seq analysis bundle☆37Updated 6 years ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆33Updated last year
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆39Updated 4 years ago
- ☆41Updated 4 years ago
- ☆50Updated 5 years ago
- Gene group activity utility functions for Scanpy☆97Updated 11 months ago
- Methods for decontamination of single cell data☆50Updated 9 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆91Updated 6 months ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆24Updated last year
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆65Updated 2 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆110Updated 7 months ago
- scGSVA: Perform GSVA for single cell RNA seq☆67Updated last year
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆37Updated last year
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆52Updated last year
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 7 months ago
- R implementation of GeneTrajectory☆65Updated last year
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆34Updated 10 months ago