Teichlab / Genes2GenesLinks
Aligning gene expression trajectories of single-cell reference and query systems
☆73Updated 9 months ago
Alternatives and similar repositories for Genes2Genes
Users that are interested in Genes2Genes are comparing it to the libraries listed below
Sorting:
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 8 months ago
- Functions for single cell data analysis☆32Updated 4 years ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆42Updated 2 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆55Updated 3 months ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 8 months ago
- R package for pathway analysis in scRNA-seq data☆75Updated 11 months ago
- Functional Inference of Gene Regulation☆46Updated last year
- Single cell RNA-seq analysis bundle☆35Updated 5 years ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆32Updated last year
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆86Updated last month
- ☆41Updated 4 years ago
- R package for Protein activity analysis of single-cell RNAseq.☆83Updated 2 years ago
- ☆50Updated 5 years ago
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆58Updated 2 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆85Updated 2 months ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆22Updated last year
- Draw phylogenetic trees of tumor evolution☆81Updated 2 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated last year
- Gene group activity utility functions for Scanpy☆83Updated 7 months ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆31Updated 6 months ago
- ☆55Updated last month
- Gene set enrichment analysis for single-cell RNAseq data☆28Updated 2 years ago
- Analysis of cell-cell communication at single-cell resolution☆103Updated 10 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆37Updated 4 years ago
- Methods for decontamination of single cell data☆47Updated 5 months ago
- ☆55Updated last year
- MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…☆23Updated last year
- Accurate and fast cell marker gene identification with COSG☆46Updated 4 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 9 months ago