WanluLiuLab / scAtlasVAELinks
☆35Updated 3 months ago
Alternatives and similar repositories for scAtlasVAE
Users that are interested in scAtlasVAE are comparing it to the libraries listed below
Sorting:
- R implementation of GeneTrajectory☆58Updated last year
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆22Updated last year
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆65Updated 7 months ago
- Gene group activity utility functions for Scanpy☆76Updated 5 months ago
- ☆44Updated last year
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆37Updated 4 years ago
- Mapping the Functional Landscape of TCR Repertoire☆34Updated 3 years ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Functional Inference of Gene Regulation☆44Updated 10 months ago
- code repository for Lagattuta et al. "Repertoire analyses reveal T cell receptor sequence features that influence T cell fate." Nat. Imm.…☆13Updated 4 months ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆68Updated last month
- Single cell omics biology annotations☆51Updated last month
- A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…☆24Updated last month
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆25Updated 3 months ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆41Updated last year
- ☆51Updated 8 months ago
- Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets☆38Updated last year
- Using TCR and expression for sequence embedding☆54Updated 3 months ago
- Whole mouse brain snATAC seq analysis☆25Updated last month
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆32Updated 11 months ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆28Updated 4 months ago
- ☆65Updated 11 months ago
- Scripts used to perform the analyses to study the Biology of Myeloid Cells in Glioma Microenvironments☆17Updated 2 weeks ago
- Accurate and fast cell marker gene identification with COSG☆44Updated 2 months ago
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆20Updated last month
- Analysis of cell-cell communication at single-cell resolution☆101Updated 8 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 5 months ago
- Functions for single cell data analysis☆32Updated 4 years ago