WanluLiuLab / scAtlasVAE
☆32Updated last month
Alternatives and similar repositories for scAtlasVAE:
Users that are interested in scAtlasVAE are comparing it to the libraries listed below
- ☆44Updated 11 months ago
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆21Updated 10 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- ☆50Updated 7 months ago
- R implementation of GeneTrajectory☆58Updated last year
- Functional Inference of Gene Regulation☆41Updated 9 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆63Updated 6 months ago
- Mapping the Functional Landscape of TCR Repertoire☆34Updated 3 years ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year
- Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets☆37Updated last year
- inferring regulatory cellular dynamics☆36Updated 2 weeks ago
- Whole mouse brain snATAC seq analysis☆25Updated 3 weeks ago
- Gene group activity utility functions for Scanpy☆71Updated 3 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆77Updated 7 months ago
- ☆13Updated last year
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆35Updated 4 years ago
- ☆48Updated 8 months ago
- A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…☆22Updated last week
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆40Updated 3 months ago
- Single cell omics biology annotations☆51Updated last month
- Using TCR and expression for sequence embedding☆53Updated 2 months ago
- ☆61Updated 9 months ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆25Updated last month
- Python implementation of Gene Trajectory☆25Updated 7 months ago
- Code repository for single cell RNA-seq☆34Updated 4 years ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆28Updated 3 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆27Updated 4 months ago
- Inferring CNV data from single cell ATAC seq☆23Updated last year
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆32Updated 9 months ago