davidliwei / PS
Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights in single-cell perturbation datasets.
☆13Updated last year
Alternatives and similar repositories for PS:
Users that are interested in PS are comparing it to the libraries listed below
- CAST package☆34Updated 6 months ago
- Publically accessible code for DIISCO method☆10Updated 6 months ago
- A computational tool for identification of 3D multi-modal spatial neighborhoods☆11Updated 2 months ago
- ☆24Updated 2 months ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆11Updated 6 months ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆25Updated 2 months ago
- Scanner of specific spatial patterns in tissues☆13Updated 2 years ago
- Single-Cell Inference of Class Switch Recombination☆19Updated last month
- Computational pipeline to process EasySci-RNA data.☆18Updated last year
- ☆11Updated 11 months ago
- analysis scripts related to Jin et al manuscript on scRNA seq in aging mouse brain☆17Updated 10 months ago
- Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq☆13Updated last year
- Spatial One☆24Updated 6 months ago
- Spatial direct messaging detected by bivariate Moran☆26Updated this week
- ☆17Updated 2 weeks ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Updated 2 months ago
- Identifying external communication signals using single-cell transcriptomics data☆20Updated 10 months ago
- ☆9Updated 9 months ago
- ☆17Updated last year
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆27Updated 3 weeks ago
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆11Updated 7 months ago
- Ordering gene-expression and functional events in single-cell experiments☆22Updated last year
- ☆12Updated 3 months ago
- Code for a multimodal atlas of healthy and injured cell states and niches in the human kidney☆18Updated last year
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆27Updated last year
- CeLEry: cell location recovery in single-cell RNA sequencing☆34Updated 2 months ago
- UHCA☆11Updated 3 months ago
- ☆16Updated 11 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆34Updated this week