Alternatives and similar repositories for PS

Users that are interested in PS are comparing it to the libraries listed below

• ding-lab / mushroom
  A computational tool for identification of 3D multi-modal spatial neighborhoods
  ☆11Updated 4 months ago
• azizilab / DIISCO_public
  Publically accessible code for DIISCO method
  ☆10Updated 7 months ago
• wanglab-broad / CAST
  CAST package
  ☆40Updated 7 months ago
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆27Updated last month
• Banovich-Lab / Spatial_PF
  ☆28Updated 3 months ago
• tudaga / LabelCorrection
  Python code for cross-condition label refinement in single-cell data with HiDDEN
  ☆12Updated 9 months ago
• YiLab-SC / scHolography
  ☆11Updated last year
• Sanofi-Public / spatialone-pipeline
  Spatial One
  ☆28Updated 7 months ago
• zhang-bin-98 / A-spatial-transcriptome-landscape-of-mouse-aging
  ☆13Updated 7 months ago
• JunyueCaoLab / EasySci
  Computational pipeline to process EasySci-RNA data.
  ☆20Updated last year
• welch-lab / cytosignal
  ☆18Updated last month
• JinmiaoChenLab / scTM
  scTM: A package for topic modelling in transcriptomics data
  ☆20Updated last year
• bm2-lab / SpaDo
  Multi-slice Spatial Transcriptome Domain Analysis.
  ☆11Updated 6 months ago
• QihuangZhang / CeLEry
  CeLEry: cell location recovery in single-cell RNA sequencing
  ☆35Updated 4 months ago
• ding-lab / ST_subclone_publication
  Code for spatial subclone paper
  ☆11Updated 4 months ago
• qingnanl / gsdensity
  ☆9Updated 11 months ago
• Fraternalilab / sciCSR
  Single-Cell Inference of Class Switch Recombination
  ☆19Updated 2 months ago
• hernet / transcriptional-map-nk
  We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…
  ☆11Updated 8 months ago
• CamaraLab / ConDecon
  R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…
  ☆13Updated 8 months ago
• bsungwoo / spSeudoMap
  spSeudoMap: cell type mapping of spatial transcriptomics using unmatched single-cell RNA-seq data
  ☆12Updated 8 months ago
• bioinfo-biols / SEVtras
  sEV-containing droplet identification in scRNA-seq data (SEVtras)
  ☆26Updated 4 months ago
• Coolgenome / PDAC
  ☆15Updated 4 months ago
• kaifuchenlab / MEBOCOST
  ☆21Updated last week
• wanglab-broad / spin
  SPatial INtegration of spatially resolved transcriptomics datasets
  ☆17Updated 3 months ago
• ChanghanGitHub / exFINDER
  Identifying external communication signals using single-cell transcriptomics data
  ☆20Updated last year
• raphael-group / CalicoST
  Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics
  ☆35Updated 2 weeks ago
• kaishumason / NicheDE
  NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.
  ☆19Updated last week
• lifei176 / Single-cell-atlas-of-sex-differences-and-androgen-effects
  ☆17Updated last year
• CSOgroup / cellcharter_analyses
  ☆11Updated last year
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated 3 months ago