axelalmet / flowsigLinks
Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.
☆78Updated 6 months ago
Alternatives and similar repositories for flowsig
Users that are interested in flowsig are comparing it to the libraries listed below
Sorting:
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆79Updated 3 months ago
- ☆125Updated 3 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated 2 months ago
- R implementation of GeneTrajectory☆65Updated last year
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆81Updated 2 years ago
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆127Updated last year
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆84Updated 2 years ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- R package for pathway analysis in scRNA-seq data☆75Updated last year
- ☆36Updated this week
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆63Updated 2 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆56Updated 5 months ago
- Accurate and fast cell marker gene identification with COSG☆51Updated last week
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆38Updated 4 years ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆80Updated 7 months ago
- Gene group activity utility functions for Scanpy☆93Updated 10 months ago
- ☆45Updated last year
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆32Updated 9 months ago
- ☆40Updated 2 years ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆43Updated 2 years ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆70Updated 4 years ago
- Construct Tumor Transition Zone Microenvironment☆49Updated 4 months ago
- Analysis of cell-cell communication at single-cell resolution☆104Updated last year
- R package for Protein activity analysis of single-cell RNAseq.☆84Updated 2 years ago
- Cellular dynamics across aged human brains uncover a multicellular cascade leading to Alzheimer’s disease☆61Updated 10 months ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆110Updated 6 months ago
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆52Updated 9 months ago
- ☆58Updated last year
- Predict RNA velocity through deep learning☆71Updated last year
- A tool for semi-automatic cell type harmonization and integration☆111Updated 7 months ago