axelalmet / flowsigView external linksLinks
Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.
☆82Apr 22, 2025Updated 9 months ago
Alternatives and similar repositories for flowsig
Users that are interested in flowsig are comparing it to the libraries listed below
Sorting:
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆27Mar 16, 2025Updated 10 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆81Aug 10, 2025Updated 6 months ago
- ☆129Apr 24, 2024Updated last year
- ☆12Sep 29, 2023Updated 2 years ago
- Spot pseudo-Imager on top of histology☆44Dec 12, 2025Updated 2 months ago
- Single-Cell Inference of Class Switch Recombination☆20Updated this week
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Sep 21, 2024Updated last year
- Non-parametric density inference for single-cell analysis.☆73May 22, 2025Updated 8 months ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆54Oct 31, 2024Updated last year
- scVI extension for unspliced RNA☆16May 18, 2025Updated 8 months ago
- Codes for the scPLC project☆74Dec 2, 2022Updated 3 years ago
- ☆33Jan 26, 2026Updated 2 weeks ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆138Feb 20, 2025Updated 11 months ago
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆407Aug 22, 2025Updated 5 months ago
- Gene group activity utility functions for Scanpy☆100Dec 21, 2024Updated last year
- Quantifying metabolism activity at the single-cell resolution☆151Jun 27, 2025Updated 7 months ago
- ☆145Apr 19, 2025Updated 9 months ago
- a spatial deconvolution method based on deep learning frameworks, which converts bulk transcriptomes into spatially resolved single-cell …☆130Mar 22, 2023Updated 2 years ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆37Feb 14, 2025Updated 11 months ago
- ☆23Jan 21, 2026Updated 3 weeks ago
- ☆30May 4, 2025Updated 9 months ago
- A tissue-specific single-cell biological age model☆13Jul 26, 2023Updated 2 years ago
- ☆13Sep 30, 2024Updated last year
- A tool for semi-automatic cell type harmonization and integration☆118Nov 3, 2025Updated 3 months ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Feb 22, 2025Updated 11 months ago
- LIANA: a LIgand-receptor ANalysis frAmework☆231Aug 7, 2024Updated last year
- Significance analysis for clustering single-cell RNA-sequencing data☆123Sep 7, 2024Updated last year
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆180Aug 12, 2025Updated 6 months ago
- ☆27Jun 4, 2023Updated 2 years ago
- A computational tool for identification of 3D multi-modal spatial neighborhoods☆15Aug 1, 2025Updated 6 months ago
- BANKSY: spatial clustering☆136Oct 15, 2025Updated 3 months ago
- Assessing the purity of single cell population☆141Jun 3, 2022Updated 3 years ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆540Oct 7, 2025Updated 4 months ago
- ☆62Dec 8, 2025Updated 2 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆31Feb 28, 2022Updated 3 years ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆128May 5, 2025Updated 9 months ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Nov 30, 2023Updated 2 years ago
- Mosaic single cell data integration using non-overlapping features☆37Sep 20, 2022Updated 3 years ago
- Genotype-Neighborhood Associations: A tool for identifying genetic variant associations to the abundance of cell states in single-cell d…☆16Oct 5, 2024Updated last year