axelalmet / flowsigLinks
Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.
☆76Updated 4 months ago
Alternatives and similar repositories for flowsig
Users that are interested in flowsig are comparing it to the libraries listed below
Sorting:
- R implementation of GeneTrajectory☆63Updated last year
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆38Updated 3 years ago
- ☆125Updated 3 years ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆78Updated 3 weeks ago
- R package for pathway analysis in scRNA-seq data☆75Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆73Updated 2 weeks ago
- ☆45Updated last year
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆76Updated 2 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆56Updated 3 months ago
- Analysis of cell-cell communication at single-cell resolution☆104Updated 11 months ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆83Updated last year
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆79Updated 5 months ago
- ☆55Updated 10 months ago
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆60Updated 2 years ago
- ☆30Updated 5 months ago
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆120Updated 11 months ago
- Cellular dynamics across aged human brains uncover a multicellular cascade leading to Alzheimer’s disease☆60Updated 8 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆63Updated 3 weeks ago
- Metacells - Single-cell RNA Sequencing Analysis☆110Updated 10 months ago
- This repository contains all code used for the Human Lung Cell Atlas project.☆51Updated 2 years ago
- Accurate and fast cell marker gene identification with COSG☆46Updated 5 months ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆108Updated 3 months ago
- R package for Protein activity analysis of single-cell RNAseq.☆83Updated 2 years ago
- Gene group activity utility functions for Scanpy☆84Updated 8 months ago
- Unsupervised Inference of Developmental Directions for Single Cells☆22Updated last year
- Single-cell Lung Cancer Atlas with 1.2M cells☆65Updated 7 months ago
- ☆45Updated 2 months ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆42Updated 2 years ago
- Methods for decontamination of single cell data☆47Updated 6 months ago