immunogenomics / GeNA
Genotype-Neighborhood Associations: A tool for identifying genetic variant associations to the abundance of cell states in single-cell datasets
☆12Updated 5 months ago
Alternatives and similar repositories for GeNA:
Users that are interested in GeNA are comparing it to the libraries listed below
- Multi-resolution Variational Inference☆22Updated last week
- Aligning gene expression trajectories of single-cell reference and query systems☆60Updated 4 months ago
- Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)☆17Updated last year
- ☆39Updated 3 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆38Updated 2 months ago
- ☆50Updated 6 months ago
- Functional Inference of Gene Regulation☆40Updated 8 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆26Updated 3 months ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆28Updated 2 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆51Updated 5 months ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆47Updated 4 months ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 3 months ago
- Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020☆16Updated last year
- ☆25Updated 3 weeks ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆31Updated 9 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 4 months ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆21Updated 9 months ago
- ☆16Updated 8 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆48Updated last week
- Removing empty droplets in multiome datasets☆15Updated 9 months ago
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data☆18Updated 3 months ago
- Functions for single cell data analysis☆31Updated 3 years ago
- Unsupervised Inference of Developmental Directions for Single Cells☆21Updated last year
- ☆27Updated 2 weeks ago
- Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types☆26Updated 3 years ago
- ☆50Updated 7 months ago
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆35Updated 6 months ago
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆15Updated last year
- Gene Set + S2G strategy annotations analyzed for disease architecture☆50Updated 2 years ago