cell type specific, trait-associated gene regulation
☆30Mar 31, 2025Updated last year
Alternatives and similar repositories for snp2cell
Users that are interested in snp2cell are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Nextflow implementation of scAutoQC pipeline☆11Feb 21, 2026Updated 3 months ago
- Gene group activity utility functions for Scanpy☆103Dec 21, 2024Updated last year
- ☆64Apr 22, 2026Updated last month
- Integration of gut cell atlases☆35May 6, 2026Updated 2 weeks ago
- ☆41Jul 14, 2023Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- scVI extension for unspliced RNA☆15May 18, 2025Updated last year
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆87Apr 21, 2025Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆88Aug 10, 2025Updated 9 months ago
- ☆14Jan 24, 2024Updated 2 years ago
- R package for ReDeeM: single-cell Regulatory multi-omics with Deep Mitochondrial mutation profiling.☆19Apr 29, 2026Updated 3 weeks ago
- Join subcellular Visium HD bins into cells☆142May 8, 2026Updated 2 weeks ago
- Repo with analysis code for the vascular atlas paper☆10Nov 22, 2024Updated last year
- ☆35Mar 16, 2026Updated 2 months ago
- Removing empty droplets in multiome datasets☆17Jun 3, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Single cell RNA-seq and ATAC seq analysis of cardiac progenitor cell transition states and lineage settlement☆11Oct 20, 2020Updated 5 years ago
- Tools for DLO HiC data analyze☆16Oct 31, 2022Updated 3 years ago
- ☆19Feb 5, 2025Updated last year
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆41Nov 18, 2021Updated 4 years ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆37Apr 2, 2025Updated last year
- CAST package☆44Oct 26, 2024Updated last year
- R tools for analysis and visualization of single-cell subclustering data☆19May 1, 2026Updated 2 weeks ago
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆25Apr 8, 2025Updated last year
- ☆47Jan 28, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- scPrisma is a spectral analysis method, for pseudotime reconstruction, informative genes inference, filtering, and enhancement of underly…☆19Mar 31, 2024Updated 2 years ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆49Aug 18, 2025Updated 9 months ago
- Simple template for running snakemake with R☆12Jan 31, 2023Updated 3 years ago
- Network analyses of single cell-based digital twins for personalized treatment of inflammatory disease☆15Mar 23, 2024Updated 2 years ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆394May 6, 2026Updated 2 weeks ago
- ☆40Aug 29, 2025Updated 8 months ago
- Collection of analysis tools for quantitative trait loci☆65Apr 26, 2026Updated 3 weeks ago
- ☆49May 13, 2026Updated last week
- Functional and Learnable Cell dynamicS☆21May 13, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆27May 14, 2026Updated last week
- ☆53Oct 9, 2025Updated 7 months ago
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Apr 20, 2024Updated 2 years ago
- Nextflow pipeline to re-process all public single-cell RNA-seq data☆33Jul 9, 2025Updated 10 months ago
- R package IReNA☆31Nov 13, 2024Updated last year
- ☆20May 12, 2026Updated last week
- Trends in single cell papers☆17Sep 23, 2024Updated last year