pachterlab / CGCCP_2023Links
scVI extension for unspliced RNA
☆16Updated 2 months ago
Alternatives and similar repositories for CGCCP_2023
Users that are interested in CGCCP_2023 are comparing it to the libraries listed below
Sorting:
- cell type specific, trait-associated gene regulation☆27Updated 4 months ago
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆10Updated 2 years ago
- Landscape Single Cell Entropy☆20Updated 4 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 4 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆40Updated last month
- Genotype-Neighborhood Associations: A tool for identifying genetic variant associations to the abundance of cell states in single-cell d…☆14Updated 9 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 6 months ago
- ☆29Updated 2 years ago
- Paired Insertion Counting for snATAC-seq data☆17Updated 2 months ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago
- ☆32Updated 6 months ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 2 years ago
- A modular tool for proportion analysis in single-cell sequencing data☆22Updated 2 months ago
- ☆37Updated last year
- ☆17Updated last year
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆32Updated 4 months ago
- CIARA (Cluster Independent Algorithm for the identification of markers of RAre cell types) is an R package that identifies potential mar…☆15Updated 2 years ago
- Gene Set + S2G strategy annotations analyzed for disease architecture☆53Updated 2 years ago
- ☆27Updated 4 months ago
- Analyzing chromatin accessibility data in R☆18Updated 2 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆53Updated 2 months ago
- ADTnorm normalizes the cell surface protein measurement of CITE-seq data, facilitating across batches and across studies data integration…☆22Updated 3 weeks ago
- R package for generalized binary covariance decomposition.☆10Updated 3 weeks ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆16Updated 3 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 9 months ago
- R package IReNA☆28Updated 8 months ago
- ☆23Updated 2 years ago
- ☆16Updated 3 months ago