pachterlab / CGCCP_2023
scVI extension for unspliced RNA
☆16Updated 3 weeks ago
Related projects ⓘ
Alternatives and complementary repositories for CGCCP_2023
- ☆27Updated 3 months ago
- ☆29Updated last year
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆17Updated 10 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆45Updated 3 weeks ago
- An end-to-end computational pipeline for large Perturb-seq screens☆12Updated last year
- ☆16Updated 4 months ago
- scover☆22Updated last year
- RNA velocity validation☆23Updated 2 years ago
- Gene regulatory network inference for RNA velocity and pseudotime data☆22Updated 9 months ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆20Updated 7 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆28Updated this week
- ☆17Updated last month
- Multi-resolution Variational Inference☆22Updated last month
- ☆20Updated last year
- Removing empty droplets in multiome datasets☆10Updated 5 months ago
- ☆37Updated 2 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆34Updated 8 months ago
- Genotype-Neighborhood Associations: A tool for identifying genetic variant associations to the abundance of cell states in single-cell d…☆12Updated last month
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆24Updated last month
- Pipeline for Universal Mapping of ATAC-seq☆24Updated 6 months ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆20Updated 2 months ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆15Updated this week
- Information-based dimensionality reduction☆29Updated 3 months ago
- Vaeda method for computational doublet annotation☆13Updated 4 months ago
- ☆12Updated 3 years ago
- A method for analyzing scATAC-seq experiments.☆23Updated last month
- ☆40Updated 3 months ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆32Updated last year
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆21Updated 2 months ago
- Causal inference, differential expression, and co-expression for scRNA-seq☆18Updated 3 years ago