QihuangZhang / CeLEryLinks
CeLEry: cell location recovery in single-cell RNA sequencing
☆35Updated 7 months ago
Alternatives and similar repositories for CeLEry
Users that are interested in CeLEry are comparing it to the libraries listed below
Sorting:
- ☆31Updated 7 months ago
- ☆31Updated 2 months ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- ☆30Updated 5 months ago
- Spatial direct messaging detected by bivariate Moran☆29Updated 2 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆56Updated 5 months ago
- ☆51Updated 4 months ago
- scTM: A package for topic modelling in transcriptomics data☆22Updated last year
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆36Updated 8 months ago
- Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information☆21Updated 3 years ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆78Updated 5 months ago
- CAST package☆40Updated 11 months ago
- CellNeighborEX: Deciphering Neighbor-Dependent Gene Expression from Spatial Transcriptomics Data☆16Updated last year
- ☆14Updated 3 months ago
- ☆39Updated 2 years ago
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆32Updated 5 months ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆80Updated 3 years ago
- Spatial Cellular Estimator for Tumors☆57Updated last month
- ☆26Updated last year
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆28Updated last year
- This repository contains all code used for the Human Lung Cell Atlas project.☆55Updated 2 years ago
- Gene group activity utility functions for Scanpy☆90Updated 9 months ago
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆52Updated 8 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated last month
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆59Updated 3 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆41Updated last month
- R package for pathway analysis in scRNA-seq data☆75Updated last year
- Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)☆20Updated 2 years ago
- Unsupervised Inference of Developmental Directions for Single Cells☆22Updated last year
- Detect hierarchical structures in cell-cell communications☆15Updated 8 months ago