CeLEry: cell location recovery in single-cell RNA sequencing
☆37Feb 14, 2025Updated last year
Alternatives and similar repositories for CeLEry
Users that are interested in CeLEry are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Detect hierarchical structures in cell-cell communications☆16Jan 26, 2025Updated last year
- ☆33May 4, 2025Updated 11 months ago
- bioInfograph: an online tool to design and display multi-panel scientific figure interactively☆12Feb 15, 2022Updated 4 years ago
- CellDepot: A unified repository for scRNA-seq data and visual exploration. J Mol Biol. 2021 Dec 28:167425. doi: 10.1016/j.jmb.2021.167425…☆24Apr 24, 2023Updated 2 years ago
- ☆12May 29, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆13Sep 29, 2023Updated 2 years ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆139Feb 20, 2025Updated last year
- python API to the CoGAPS NMF package☆20May 19, 2025Updated 10 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆85Aug 10, 2025Updated 8 months ago
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆68Jul 2, 2025Updated 9 months ago
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆78May 24, 2024Updated last year
- bioInfograph: an online tool to design and display multi-panel scientific figure interactively☆11Mar 2, 2022Updated 4 years ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆86Mar 19, 2026Updated 3 weeks ago
- ☆47Jul 24, 2025Updated 8 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Quickomics: exploring omics data in an intuitive, interactive and informative manner. Bioinformatics. 2021 Apr 26:btab255.☆42Updated this week
- ☆30Oct 4, 2024Updated last year
- a deep generative model for single-cell survival analysis☆22Dec 2, 2025Updated 4 months ago
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆130May 29, 2025Updated 10 months ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆43Feb 19, 2026Updated last month
- OmicsView: omics data analysis through interactive visual analytics☆16Apr 13, 2022Updated 4 years ago
- ☆15Nov 17, 2025Updated 4 months ago
- Non-parametric density inference for single-cell analysis.☆73Updated this week
- Self-supervised representation learning combining GTEx histology, RNA-seq and WGS☆34Apr 9, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆53Oct 31, 2024Updated last year
- A novel machine learning pipeline to analyse spatial transcriptomics data☆244Updated this week
- ☆161Dec 20, 2024Updated last year
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆41Jul 1, 2024Updated last year
- code and dataset for spatialDWLS☆14Apr 18, 2021Updated 4 years ago
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆160Mar 23, 2026Updated 3 weeks ago
- Her2 Breast Cancer Project☆98Nov 27, 2022Updated 3 years ago
- Alignment of spatial genomics data using deep Gaussian processes☆31Dec 14, 2022Updated 3 years ago
- Spot pseudo-Imager on top of histology☆48Dec 12, 2025Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆27Mar 16, 2025Updated last year
- Single-cell Graph Cuts Optimization☆16Apr 27, 2024Updated last year
- Interactive applications of stlearn☆15May 1, 2023Updated 2 years ago
- Python playground for cell-type-specific biology☆12Apr 8, 2026Updated last week
- Reworked clustering metrics for assessing performance in imbalanced settings☆18Jun 3, 2024Updated last year
- Methods for visualization and analysis of spatially-resolved gene expression☆23Mar 19, 2026Updated 3 weeks ago
- Code for the spatialLIBD R/Bioconductor package and shiny app☆112Mar 27, 2026Updated 2 weeks ago