Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA
☆84Apr 21, 2025Updated 10 months ago
Alternatives and similar repositories for SCENT
Users that are interested in SCENT are comparing it to the libraries listed below
Sorting:
- ☆62Dec 8, 2025Updated 2 months ago
- cell type specific, trait-associated gene regulation☆29Mar 31, 2025Updated 11 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆83Aug 10, 2025Updated 6 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Jan 11, 2025Updated last year
- single-cell Contamination Detection and Correction☆16Jan 15, 2025Updated last year
- ☆126Jan 31, 2026Updated last month
- ☆63Sep 13, 2024Updated last year
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆34Apr 2, 2025Updated 10 months ago
- Gene Set + S2G strategy annotations analyzed for disease architecture☆59Nov 18, 2022Updated 3 years ago
- GWAS genetics Fine-mapping method☆26Oct 16, 2024Updated last year
- Single-cell disease relevance score (scDRS)☆176Sep 2, 2025Updated 5 months ago
- R and MATLAB scripts for MAGICAL☆11Jun 26, 2024Updated last year
- Context specific and dynamic gene regulatory network reconstruction and analysis☆127Nov 24, 2025Updated 3 months ago
- Learning meaningful representations of genes☆21Jul 7, 2025Updated 7 months ago
- identifying disease critical cell types and programs from single cell RNAseq☆58May 30, 2022Updated 3 years ago
- Deconvolution of spatial transcriptomics at single-cell resolution☆20Sep 19, 2024Updated last year
- Open4Gene, A Hurdle Model-based Method for Peak-to-Gene Linkage Analysis☆16Dec 1, 2025Updated 2 months ago
- Functional Inference of Gene Regulation☆51Jul 5, 2024Updated last year
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆26Sep 20, 2022Updated 3 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Dec 3, 2024Updated last year
- R package for generalized binary covariance decomposition.☆14Jul 13, 2025Updated 7 months ago
- lncHOME (lncRNA Homology Explorer), a computational pipeline that identifies a unique coPARSE-lncRNA class with conserved genomic locatio…☆12Nov 2, 2023Updated 2 years ago
- CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements☆22Oct 8, 2025Updated 4 months ago
- ☆33Apr 11, 2025Updated 10 months ago
- Colocalization analysis of genetic association signals☆55Jun 13, 2025Updated 8 months ago
- Quality control steps for GWAS☆26Aug 11, 2023Updated 2 years ago
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆37Aug 22, 2024Updated last year
- scGRO-seq analyses codes☆13Jan 9, 2024Updated 2 years ago
- GWAS genetics Fine-mapping method☆17May 17, 2024Updated last year
- ☆16Sep 1, 2023Updated 2 years ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆245Jan 16, 2026Updated last month
- Multiome GRN inference.☆135Apr 19, 2024Updated last year
- Pan-Cancer Single Cell Classifier☆84May 30, 2024Updated last year
- ☆122Sep 4, 2025Updated 5 months ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆138Feb 20, 2025Updated last year
- Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data☆17Apr 15, 2025Updated 10 months ago
- single-cell decorrelated module networks☆30Aug 24, 2024Updated last year
- ☆36Apr 16, 2025Updated 10 months ago
- AUCell: score single cells with gene regulatory networks☆185Mar 9, 2024Updated last year