Teichlab / drug2cellLinks
Gene group activity utility functions for Scanpy
☆79Updated 6 months ago
Alternatives and similar repositories for drug2cell
Users that are interested in drug2cell are comparing it to the libraries listed below
Sorting:
- Spatial transcriptomics of heart tissue☆88Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆68Updated 8 months ago
- R implementation of GeneTrajectory☆59Updated last year
- Single-cell Lung Cancer Atlas with 1.2M cells☆64Updated 5 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆54Updated 2 months ago
- R package for pathway analysis in scRNA-seq data☆75Updated 10 months ago
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆57Updated 6 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 7 months ago
- Collection of scripts for analysis of pan fetal immune atlas☆27Updated 2 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆84Updated last month
- This repository contains all code used for the Human Lung Cell Atlas project.☆51Updated last year
- Single cell omics biology annotations☆51Updated 2 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆61Updated last week
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆39Updated 3 years ago
- Single-Cell Inference of Class Switch Recombination☆19Updated 3 months ago
- A tool for semi-automatic cell type harmonization and integration☆108Updated 3 months ago
- ☆45Updated last year
- Analysis of cell-cell communication at single-cell resolution☆101Updated 10 months ago
- ☆37Updated last year
- Unified access to several second-generation deconvolution methods☆73Updated this week
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆62Updated 3 years ago
- Using TCR and expression for sequence embedding☆57Updated 5 months ago
- Predict RNA velocity through deep learning☆70Updated last year
- ☆68Updated last year
- A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…☆50Updated last month
- ☆41Updated 4 years ago
- ☆54Updated 2 weeks ago
- ☆54Updated 11 months ago
- ☆53Updated 9 months ago
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆20Updated 2 months ago