KlugerLab / GeneTrajectory-pythonLinks
Python implementation of Gene Trajectory
☆30Updated last year
Alternatives and similar repositories for GeneTrajectory-python
Users that are interested in GeneTrajectory-python are comparing it to the libraries listed below
Sorting:
- R implementation of GeneTrajectory☆69Updated last year
- ☆46Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated last year
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated 4 months ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆53Updated last year
- cell type specific, trait-associated gene regulation☆29Updated 9 months ago
- ☆61Updated last month
- Parse ArchR arrow files to anndata h5ad☆16Updated 2 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last year
- ☆40Updated 6 months ago
- ☆30Updated 8 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated last year
- Single cell omics biology annotations☆51Updated 8 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆80Updated 5 months ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆26Updated last year
- SPROD: Spatial expression profiling de-noising☆36Updated 2 years ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆45Updated 4 months ago
- Accurate and fast cell marker gene identification with COSG☆54Updated 3 weeks ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆14Updated last year
- iterative clustering pipeline of big single cell datasets.☆35Updated 4 months ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆62Updated last year
- Axolotl Regenerative Telencehpalon Interpretation via Spatiotemporal Transcriptomic Atlas☆21Updated 3 years ago
- ☆13Updated 4 months ago
- Spatial direct messaging detected by bivariate Moran☆32Updated 6 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆69Updated 2 months ago
- Functional Inference of Gene Regulation☆49Updated last year
- ☆25Updated 2 years ago
- ☆40Updated 2 years ago
- Unsupervised Inference of Developmental Directions for Single Cells☆22Updated 2 years ago