KlugerLab / GeneTrajectory-pythonLinks
Python implementation of Gene Trajectory
☆26Updated 11 months ago
Alternatives and similar repositories for GeneTrajectory-python
Users that are interested in GeneTrajectory-python are comparing it to the libraries listed below
Sorting:
- R implementation of GeneTrajectory☆63Updated last year
- ☆45Updated last year
- Parse ArchR arrow files to anndata h5ad☆14Updated last year
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year
- ☆30Updated 3 months ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- ☆37Updated 2 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 8 months ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆26Updated last year
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated 11 months ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆22Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 7 months ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆50Updated 9 months ago
- ☆56Updated 2 months ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆27Updated 4 years ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆41Updated last week
- Ordering gene-expression and functional events in single-cell experiments☆23Updated last year
- A modular tool for proportion analysis in single-cell sequencing data☆22Updated 3 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆73Updated 2 weeks ago
- ☆20Updated 2 weeks ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆11Updated 10 months ago
- Axolotl Regenerative Telencehpalon Interpretation via Spatiotemporal Transcriptomic Atlas☆21Updated 3 years ago
- R and MATLAB scripts for MAGICAL☆11Updated last year
- ☆23Updated 2 years ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆42Updated 2 years ago
- iterative clustering pipeline of big single cell datasets.☆33Updated this week
- ☆27Updated last week
- Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020☆16Updated 2 years ago
- Unsupervised Inference of Developmental Directions for Single Cells☆22Updated last year
- Single cell omics biology annotations☆51Updated 4 months ago