KlugerLab / GeneTrajectory-pythonLinks
Python implementation of Gene Trajectory
☆25Updated 10 months ago
Alternatives and similar repositories for GeneTrajectory-python
Users that are interested in GeneTrajectory-python are comparing it to the libraries listed below
Sorting:
- ☆36Updated 2 weeks ago
- R implementation of GeneTrajectory☆59Updated last year
- ☆45Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 7 months ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated 10 months ago
- ☆54Updated 2 weeks ago
- R and MATLAB scripts for MAGICAL☆11Updated last year
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆26Updated last year
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆11Updated 9 months ago
- inferring regulatory cellular dynamics☆48Updated last week
- Aligning gene expression trajectories of single-cell reference and query systems☆68Updated 8 months ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆48Updated 8 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 6 months ago
- Ordering gene-expression and functional events in single-cell experiments☆22Updated last year
- ☆10Updated 2 years ago
- ☆29Updated 2 months ago
- iterative clustering pipeline of big single cell datasets.☆33Updated 2 months ago
- Data analysis for the moscot-framework project☆14Updated 6 months ago
- Single-Cell Inference of Class Switch Recombination☆19Updated 3 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 4 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆37Updated 4 years ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆39Updated 2 weeks ago
- ☆23Updated 2 years ago
- ☆20Updated 3 weeks ago
- Axolotl Regenerative Telencehpalon Interpretation via Spatiotemporal Transcriptomic Atlas☆20Updated 3 years ago
- ☆54Updated 11 months ago
- A modular tool for proportion analysis in single-cell sequencing data☆22Updated last month
- cell type specific, trait-associated gene regulation☆27Updated 3 months ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago