KlugerLab / GeneTrajectory-python
Python implementation of Gene Trajectory
☆25Updated 7 months ago
Alternatives and similar repositories for GeneTrajectory-python:
Users that are interested in GeneTrajectory-python are comparing it to the libraries listed below
- ☆44Updated 11 months ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆40Updated 3 months ago
- Parse ArchR arrow files to anndata h5ad☆13Updated last year
- Axolotl Regenerative Telencehpalon Interpretation via Spatiotemporal Transcriptomic Atlas☆19Updated 2 years ago
- Data analysis for the moscot-framework project☆12Updated 3 months ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆9Updated 6 months ago
- inferring regulatory cellular dynamics☆36Updated 3 weeks ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆47Updated 5 months ago
- Identifying external communication signals using single-cell transcriptomics data☆20Updated 10 months ago
- R implementation of GeneTrajectory☆58Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆27Updated 4 months ago
- ☆20Updated last week
- ☆9Updated 9 months ago
- cell type specific, trait-associated gene regulation☆21Updated 2 weeks ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆29Updated 7 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆63Updated 6 months ago
- Unsupervised Inference of Developmental Directions for Single Cells☆21Updated last year
- ☆36Updated 6 months ago
- ☆19Updated last year
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆25Updated last month
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated last month
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆33Updated this week
- Multi-resolution Variational Inference☆22Updated 2 weeks ago
- Spatial direct messaging detected by bivariate Moran☆26Updated 3 months ago
- ☆10Updated last year
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆33Updated 3 years ago
- ☆32Updated last month
- ☆16Updated last month
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆31Updated last year