xushiabbvie / TDtoolView external linksLinks
☆13Jan 8, 2026Updated last month
Alternatives and similar repositories for TDtool
Users that are interested in TDtool are comparing it to the libraries listed below
Sorting:
- tumor - cancer cell line alignment. Use it on the depmap portal or install it with pip.☆11Dec 5, 2023Updated 2 years ago
- Gene Expression Decomposition and Integration☆19Updated this week
- CaDRReS-Sc is a framework for analyzing drug response heterogeneity based on single-cell RNA-seq data☆18May 7, 2022Updated 3 years ago
- Clonal structure identification through penalizing pairwise differences☆11Nov 25, 2025Updated 2 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆81Aug 10, 2025Updated 6 months ago
- Testing a neutral evolution model on cancer sequencing data☆10Feb 17, 2021Updated 4 years ago
- Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcript…☆11Jan 15, 2024Updated 2 years ago
- CALDER (Cancer Analysis of Longitudinal Data through Evolutionary Reconstruction) reconstructs evolutionary trees from longitudinal bulk …☆15Nov 28, 2023Updated 2 years ago
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆14Jan 15, 2017Updated 9 years ago
- Code for paper "Principled feature attribution for unsupervised gene expression analysis"☆12Mar 7, 2023Updated 2 years ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆23Jan 3, 2026Updated last month
- ☆15Aug 11, 2025Updated 6 months ago
- Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression☆15Jun 28, 2024Updated last year
- A General Framework for Consensus Partitioning☆65Jan 30, 2026Updated 2 weeks ago
- A Python toolkit for biomedical data integration and harmonization☆18Nov 25, 2025Updated 2 months ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆21Jan 26, 2026Updated 2 weeks ago
- ☆21Apr 16, 2024Updated last year
- Codes used for all the data analysis steps in the paper "Single-cell transcriptomics identifies an effectorness gradient shaping the resp…☆16Apr 15, 2020Updated 5 years ago
- Maximum mean discrepancy comparisons for single cell profiling experiments☆19Feb 9, 2022Updated 4 years ago
- ☆18Jan 30, 2023Updated 3 years ago
- analysis script for GBM single cell RNA seq data☆22May 26, 2021Updated 4 years ago
- ☆17Jul 13, 2024Updated last year
- ☆25Jan 30, 2026Updated 2 weeks ago
- Multi-Omics Peptide Generator☆30Nov 6, 2025Updated 3 months ago
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆21Nov 16, 2020Updated 5 years ago
- Single-cell Mutual Information-based Network Engineering Ranger☆22Aug 28, 2025Updated 5 months ago
- A modular tool for proportion analysis in single-cell sequencing data☆24Sep 19, 2025Updated 4 months ago
- Code for the paper "MetaQ: fast, scalable and accurate metacell inference via deep single-cell quantization"☆23Dec 7, 2024Updated last year
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆21Sep 8, 2023Updated 2 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Apr 16, 2021Updated 4 years ago
- Python package to load and query ARCHS4 data☆26Jul 25, 2025Updated 6 months ago
- Quantifying copy number signatures from absolute copy number profiles☆26Jul 23, 2025Updated 6 months ago
- A chronological age predictor based on DNA methylation☆22Mar 14, 2024Updated last year
- Human Endometrial Cell Atlas (HECA). An integrated single-cell reference atlas of the human endometrium.☆30Jun 19, 2024Updated last year
- Create cisTarget databases☆55Jun 18, 2025Updated 7 months ago
- Explore the cancer relevance of your gene list☆52Dec 17, 2025Updated last month
- ☆23Apr 14, 2022Updated 3 years ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆28May 16, 2024Updated last year
- Hierarchical Cell Annotation☆26Nov 17, 2024Updated last year