☆12Jan 8, 2026Updated 4 months ago
Alternatives and similar repositories for TDtool
Users that are interested in TDtool are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Gene Expression Decomposition and Integration☆21Feb 9, 2026Updated 2 months ago
- tumor - cancer cell line alignment. Use it on the depmap portal or install it with pip.☆11Dec 5, 2023Updated 2 years ago
- CaDRReS-Sc is a framework for analyzing drug response heterogeneity based on single-cell RNA-seq data☆19May 7, 2022Updated 4 years ago
- Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcript…☆11Jan 15, 2024Updated 2 years ago
- Testing a neutral evolution model on cancer sequencing data☆10Feb 17, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Clonal structure identification through penalizing pairwise differences☆11Nov 25, 2025Updated 5 months ago
- Code for paper "Principled feature attribution for unsupervised gene expression analysis"☆13Mar 7, 2023Updated 3 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆88Aug 10, 2025Updated 8 months ago
- A toolkit for biomedical data integration and harmonization☆23Updated this week
- A General Framework for Consensus Partitioning☆64Jan 30, 2026Updated 3 months ago
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆14Jan 15, 2017Updated 9 years ago
- Variant impact phenotyping using Perturb-seq☆10Apr 22, 2024Updated 2 years ago
- CALDER (Cancer Analysis of Longitudinal Data through Evolutionary Reconstruction) reconstructs evolutionary trees from longitudinal bulk …☆15Nov 28, 2023Updated 2 years ago
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆23Nov 16, 2020Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆22Apr 16, 2026Updated 3 weeks ago
- Medea: An omics AI agent for therapeutic discovery☆91Mar 26, 2026Updated last month
- ☆15Aug 11, 2025Updated 8 months ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆24Mar 26, 2026Updated last month
- Maximum mean discrepancy comparisons for single cell profiling experiments☆20Feb 9, 2022Updated 4 years ago
- Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression☆16Jun 28, 2024Updated last year
- Explore the cancer relevance of your gene list☆54Dec 17, 2025Updated 4 months ago
- ☆17Jul 13, 2024Updated last year
- Python package to load and query ARCHS4 data☆28Jul 25, 2025Updated 9 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A modular tool for proportion analysis in single-cell sequencing data☆25Feb 26, 2026Updated 2 months ago
- ☆21Apr 16, 2024Updated 2 years ago
- ☆18Jan 30, 2023Updated 3 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Apr 16, 2021Updated 5 years ago
- Multi-Omics Peptide Generator☆30Nov 6, 2025Updated 6 months ago
- Perturb-seq analysis package☆16May 2, 2024Updated 2 years ago
- ☆12Apr 28, 2026Updated last week
- Hierarchical Cell Annotation☆29Nov 17, 2024Updated last year
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆21Sep 8, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- popsicleR, a flexible R package aimed at providing most of the necessary quality controls and preliminary information for complete and de…☆25Dec 3, 2025Updated 5 months ago
- Single-cell Mutual Information-based Network Engineering Ranger☆24Aug 28, 2025Updated 8 months ago
- Imputation of missing values of a matrix or data.frame using iterative prediction model☆37Mar 5, 2026Updated 2 months ago
- Create cisTarget databases☆59Jun 18, 2025Updated 10 months ago
- Human Endometrial Cell Atlas (HECA). An integrated single-cell reference atlas of the human endometrium.☆31Jun 19, 2024Updated last year
- Codes used for all the data analysis steps in the paper "Single-cell transcriptomics identifies an effectorness gradient shaping the resp…☆16Apr 15, 2020Updated 6 years ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆29May 16, 2024Updated last year