Single-Cell Inference of Class Switch Recombination
☆24Jun 19, 2026Updated last month
Alternatives and similar repositories for sciCSR
Users that are interested in sciCSR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆21Aug 28, 2025Updated 11 months ago
- Learning meaningful representations of genes☆21Jul 7, 2025Updated last year
- scSurvival is a new tool for survival analysis from single cell cohort dataset.☆26Apr 27, 2026Updated 3 months ago
- SCIPAC (Single- Cell and bulk data-based Identifier for Phenotype Associated Cells) is a computational method that identifies cells in si…☆16Jun 30, 2024Updated 2 years ago
- Correlation-based approach for identification of endocrine interactions☆13Jan 18, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- cell type deconvolution for multi-condition bulk RNA-seq data☆34Feb 28, 2022Updated 4 years ago
- Difference in Intercellular Communication from scRNA-seq data☆25Oct 14, 2025Updated 9 months ago
- ☆33May 4, 2025Updated last year
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆89Mar 19, 2026Updated 4 months ago
- ☆17Jul 27, 2026Updated last week
- an R package for deep mining gene co-expression networks in multi-trait expression data☆23Jan 23, 2026Updated 6 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆90Jul 28, 2026Updated last week
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Apr 20, 2024Updated 2 years ago
- R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …☆25Oct 3, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- R package for the analysis of single-cell immune repertoires☆45Feb 7, 2025Updated last year
- Analysis of cell-cell communication at single-cell resolution☆107Sep 10, 2024Updated last year
- Finding the causality in biological pathways☆14Jul 12, 2023Updated 3 years ago
- A tool for semi-automatic cell type harmonization and integration☆121Mar 9, 2026Updated 5 months ago
- BulkSignalR☆27Jun 23, 2026Updated last month
- Quantifying metabolism activity at the single-cell resolution☆190Feb 18, 2026Updated 5 months ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package☆127Updated this week
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Feb 22, 2025Updated last year
- ☆64Aug 26, 2025Updated 11 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- An R library for conducting analyses on COMPASS data.☆18Jun 10, 2021Updated 5 years ago
- The single T cell annotation tool for scRNA-seq data☆28Apr 25, 2025Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆32Dec 3, 2024Updated last year
- ☆65Feb 21, 2026Updated 5 months ago
- Python playground for cell-type-specific biology☆14Jul 10, 2026Updated last month
- ImmuCellAI (Immune Cell Abundance Identifier) is a tool to estimate the abundance of 24 immune cells from gene expression dataset includi…☆18May 25, 2025Updated last year
- single cell Flux Estimation Analysis (scFEA)☆155Nov 10, 2023Updated 2 years ago
- Single Cell Oriented Reconstruction of PANDA-based Individually Optimized Networks☆28Updated this week
- Implementation of MaSigPro for scRNA-Seq Data☆20Jul 31, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆28Mar 12, 2026Updated 4 months ago
- Ordering gene-expression and functional events in single-cell experiments☆33Jul 6, 2026Updated last month
- Drug Response Estimation from single-cell Expression Profiles☆13Jan 5, 2024Updated 2 years ago
- Mapping Alternative Splicing Events to pRoteins☆21Feb 8, 2022Updated 4 years ago
- Efficiently compute robust markers across single-cell datasets☆13Apr 21, 2021Updated 5 years ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆31Aug 16, 2021Updated 4 years ago
- A tool for identifying Phenotype-Associated cell Subpopulations from single-cell sequencing data by integrating bulk data☆19Jan 16, 2026Updated 6 months ago