Fraternalilab / sciCSR
Single-Cell Inference of Class Switch Recombination
☆18Updated last week
Alternatives and similar repositories for sciCSR:
Users that are interested in sciCSR are comparing it to the libraries listed below
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Updated 3 weeks ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆27Updated 4 months ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆39Updated 2 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆24Updated 3 years ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆24Updated last month
- analysis script for GBM single cell RNA seq data☆17Updated 3 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated 9 months ago
- A unified interface to spatial transcriptomics deconvolution tools☆40Updated 3 weeks ago
- Method for de novo mutation calling from droplet based single cell RNA seq data☆13Updated 3 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆29Updated 7 months ago
- ☆9Updated 8 months ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆28Updated 2 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆40Updated last year
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆30Updated 2 years ago
- Lung cancer 10X analysis☆11Updated 4 years ago
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 5 months ago
- ☆10Updated last year
- Identifying external communication signals using single-cell transcriptomics data☆20Updated 9 months ago
- ☆13Updated last year
- ☆51Updated 8 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 5 months ago
- Unsupervised Inference of Developmental Directions for Single Cells☆21Updated last year
- ☆12Updated 8 months ago
- Code for a multimodal atlas of healthy and injured cell states and niches in the human kidney☆16Updated last year
- ☆12Updated 11 months ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆31Updated last month
- Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)☆19Updated last year
- ☆17Updated last year