Alternatives and similar repositories for TIGON:

Users that are interested in TIGON are comparing it to the libraries listed below

• WPZgithub / CEFCON
  Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data
  ☆22Updated 5 months ago
• mcgilldinglab / scSemiProfiler
  A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…
  ☆22Updated 3 months ago
• YosefLab / velovi
  ☆39Updated last week
• theislab / regvelo
  inferring regulatory cellular dynamics
  ☆36Updated last week
• ma-compbio / GAGE-seq
  Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq
  ☆12Updated last year
• kunwang34 / PhyloVelo
  PhyloVelo, Phylogeny-based transcriptomic velocity of single cells
  ☆43Updated last year
• cliffren / PENCIL
  PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.
  ☆28Updated last year
• xiaoyeye / TFvelo
  ☆44Updated 10 months ago
• cantinilab / Circe
  Co-accessibility network from single-cell ATAC-seq data. Python code, based on Cicero package (R).
  ☆20Updated last month
• StatBiomed / UniTVelo
  UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference
  ☆26Updated 4 months ago
• AllonKleinLab / paper-data
  ☆20Updated this week
• Roy-lab / scMTNI
  ☆25Updated 3 months ago
• multitalk / awesome-cell-cell-communication
  Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics
  ☆39Updated 3 weeks ago
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆39Updated 2 months ago
• KlugerLab / GeneTrajectory-python
  Python implementation of Gene Trajectory
  ☆25Updated 6 months ago
• cliffzhou92 / STT
  ☆18Updated 10 months ago
• ChanghanGitHub / exFINDER
  Identifying external communication signals using single-cell transcriptomics data
  ☆20Updated 9 months ago
• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆66Updated last year
• snehamitra / SCARlink
  ☆50Updated 6 months ago
• Spencerfar / LatentVelo
  ☆23Updated last year
• rsinghlab / scNODE
  scNODE: Generative Model for Temporal Single Cell Transcriptomic Data Prediction
  ☆19Updated 5 months ago
• tabdelaal / SpaGE
  Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data
  ☆34Updated 9 months ago
• AllonKleinLab / cospar
  ☆26Updated last year
• brianpenghe / python-genomics
  A set of files to do genomics analysis on python
  ☆18Updated 3 months ago
• KlugerLab / GeneTrajectory
  R implementation of GeneTrajectory
  ☆57Updated 11 months ago
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆71Updated 3 months ago
• ZJUFanLab / scSpace
  an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…
  ☆22Updated last year
• SunXQlab / ESICCC
  ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods
  ☆12Updated last year
• YingMa0107 / IRIS
  Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics
  ☆34Updated 2 months ago
• andreariba / DeepCycle
  Cell cycle inference in single-cell RNA-seq
  ☆45Updated last year