Alternatives and similar repositories for TIGON

Users that are interested in TIGON are comparing it to the libraries listed below

• xiaoyeye / TFvelo
  ☆45Updated last year
• WPZgithub / CEFCON
  Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data
  ☆25Updated 10 months ago
• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆70Updated last year
• bowang-lab / DeepVelo
  ☆46Updated last year
• mcgilldinglab / scSemiProfiler
  A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…
  ☆25Updated 3 months ago
• andreariba / DeepCycle
  Cell cycle inference in single-cell RNA-seq
  ☆50Updated 2 years ago
• Roy-lab / scMTNI
  ☆30Updated last month
• YosefLab / velovi
  ☆40Updated this week
• ZJUFanLab / scNiche
  a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution
  ☆39Updated last month
• kunwang34 / PhyloVelo
  PhyloVelo, Phylogeny-based transcriptomic velocity of single cells
  ☆43Updated this week
• KlugerLab / GeneTrajectory
  R implementation of GeneTrajectory
  ☆65Updated last year
• AllonKleinLab / cospar
  ☆26Updated last year
• AllonKleinLab / paper-data
  ☆20Updated this week
• Lotfollahi-lab / nichecompass
  End-to-end analysis of spatial multi-omics data
  ☆94Updated last month
• cliffren / PENCIL
  PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.
  ☆28Updated last year
• madilabcode / scNET
  ☆53Updated last week
• simonwm / tacco
  TACCO: Transfer of Annotations to Cells and their COmbinations
  ☆56Updated 2 weeks ago
• ZJUFanLab / scSpace
  an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…
  ☆23Updated 2 years ago
• StatBiomed / UniTVelo
  UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference
  ☆26Updated 10 months ago
• SONGDONGYUAN1994 / scDesign3
  scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics
  ☆102Updated 6 months ago
• tabdelaal / SpaGE
  Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data
  ☆36Updated last year
• settylab / Mellon
  Non-parametric density inference for single-cell analysis.
  ☆72Updated 3 months ago
• SchubertLab / mvTCR
  ☆54Updated 10 months ago
• dpeerlab / ENVI
  ☆50Updated 4 months ago
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆67Updated 2 years ago
• theislab / regvelo
  inferring regulatory cellular dynamics
  ☆56Updated this week
• welch-lab / MultiVelo
  Multi-omic velocity inference
  ☆110Updated 10 months ago
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆64Updated 2 months ago
• YingMa0107 / IRIS
  Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics
  ☆37Updated 7 months ago
• MarioniLab / sagenet
  Spatial reconstruction of dissociated single-cell data
  ☆19Updated last year