yutongo / TIGONLinks
☆44Updated 3 months ago
Alternatives and similar repositories for TIGON
Users that are interested in TIGON are comparing it to the libraries listed below
Sorting:
- ☆40Updated this week
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆24Updated 8 months ago
- inferring regulatory cellular dynamics☆48Updated last week
- Co-accessibility network from single-cell ATAC-seq data. Python code, based on Cicero package (R).☆21Updated this week
- Predict RNA velocity through deep learning☆69Updated last year
- ☆42Updated 3 weeks ago
- ☆45Updated last year
- ☆27Updated 2 weeks ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year
- ☆24Updated last year
- A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…☆24Updated 3 weeks ago
- an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…☆23Updated 2 years ago
- scNODE: Generative Model for Temporal Single Cell Transcriptomic Data Prediction☆21Updated 8 months ago
- Additional code and analysis from the single-cell integration benchmarking project☆67Updated 2 years ago
- ☆48Updated last month
- PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.☆28Updated last year
- Python agent-based model tool for inference, visualization and analysis of cell-cell communication from single-cell data☆31Updated 3 months ago
- ☆54Updated this week
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆48Updated 5 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆63Updated last year
- Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics☆51Updated 2 weeks ago
- The benchmarking of spatial transcriptomics deconvolution methods☆32Updated 2 years ago
- Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq☆13Updated last year
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆67Updated last year
- Cell cycle inference in single-cell RNA-seq☆46Updated 2 years ago
- Code repository for macsGESTALT single cell lineage tracing analysis https://doi.org/10.1101/2020.08.11.245787☆8Updated 4 years ago
- UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference☆26Updated 7 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆34Updated 3 months ago
- R implementation of GeneTrajectory☆59Updated last year
- ☆26Updated last year