Alternatives and similar repositories for TIGON

Users that are interested in TIGON are comparing it to the libraries listed below

• Roy-lab / scMTNI
  ☆30Updated 2 months ago
• xiaoyeye / TFvelo
  ☆45Updated last year
• madilabcode / scNET
  ☆54Updated 2 weeks ago
• mcgilldinglab / scSemiProfiler
  A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…
  ☆25Updated 4 months ago
• WPZgithub / CEFCON
  Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data
  ☆25Updated 11 months ago
• bowang-lab / DeepVelo
  ☆46Updated last year
• kunwang34 / PhyloVelo
  PhyloVelo, Phylogeny-based transcriptomic velocity of single cells
  ☆43Updated last month
• Durenlab / LINGER
  ☆116Updated 4 months ago
• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆71Updated last year
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆67Updated 2 years ago
• KlugerLab / GeneTrajectory
  R implementation of GeneTrajectory
  ☆65Updated last year
• YosefLab / velovi
  ☆40Updated this week
• theislab / regvelo
  inferring regulatory cellular dynamics
  ☆56Updated 3 weeks ago
• AllonKleinLab / cospar
  ☆26Updated last year
• AllonKleinLab / paper-data
  ☆20Updated last week
• Spencerfar / LatentVelo
  ☆26Updated 2 years ago
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆51Updated 5 months ago
• simonwm / tacco
  TACCO: Transfer of Annotations to Cells and their COmbinations
  ☆59Updated last month
• welch-lab / MultiVelo
  Multi-omic velocity inference
  ☆111Updated 11 months ago
• cliffren / PENCIL
  PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.
  ☆28Updated last year
• huidongchen / simba
  SIMBA: SIngle-cell eMBedding Along with features
  ☆19Updated last year
• Lotfollahi-lab / nichecompass
  End-to-end analysis of spatial multi-omics data
  ☆93Updated 2 months ago
• ZJUFanLab / scNiche
  a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution
  ☆41Updated 2 months ago
• YangLabHKUST / Portal
  Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets
  ☆33Updated 2 years ago
• andreariba / DeepCycle
  Cell cycle inference in single-cell RNA-seq
  ☆50Updated 2 years ago
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆65Updated 3 months ago
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆41Updated 9 months ago
• StatBiomed / UniTVelo
  UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference
  ☆26Updated 11 months ago
• pinellolab / simba
  SIMBA: SIngle-cell eMBedding Along with features
  ☆63Updated last year
• settylab / Mellon
  Non-parametric density inference for single-cell analysis.
  ☆72Updated 4 months ago