zktuong / ktplotspyLinks
Python library for plotting Cellphonedb results. Ported from ktplots R package.
☆55Updated last week
Alternatives and similar repositories for ktplotspy
Users that are interested in ktplotspy are comparing it to the libraries listed below
Sorting:
- R package for pathway analysis in scRNA-seq data☆75Updated last year
- Pan-Cancer Single Cell Classifier☆79Updated last year
- Cell-type Relationship Analysis Workflow Done Across Distances☆38Updated 3 months ago
- A unified interface to spatial transcriptomics deconvolution tools☆42Updated 2 weeks ago
- ☆94Updated 2 weeks ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆87Updated 4 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated last month
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆56Updated 5 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆89Updated 3 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated last year
- Methods for decontamination of single cell data☆47Updated 7 months ago
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆37Updated last year
- scGSVA: Perform GSVA for single cell RNA seq☆65Updated 10 months ago
- Unified access to several second-generation deconvolution methods☆78Updated last month
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆80Updated 3 years ago
- ☆45Updated 3 months ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆45Updated 3 years ago
- From geospatial to spatial -omics☆97Updated 2 weeks ago
- R package for semi-supervised single-cell data integration☆90Updated last month
- Robust identification of perturbed cell types in single-cell RNA-seq data☆33Updated 10 months ago
- Gene group activity utility functions for Scanpy☆90Updated 9 months ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆50Updated 11 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 10 months ago
- Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq …☆54Updated last year
- ☆57Updated last month
- Collection of scripts for analysis of pan fetal immune atlas☆28Updated 3 years ago
- Capybara: A computational tool to measure cell identity and fate transitions☆59Updated 3 years ago
- R package for single cell and other data analysis using diffusion maps☆88Updated 10 months ago
- ☆58Updated last year
- Single-cell Mutual Information-based Network Engineering Ranger☆20Updated last month