settylab / MellonLinks
Non-parametric density inference for single-cell analysis.
☆72Updated 4 months ago
Alternatives and similar repositories for Mellon
Users that are interested in Mellon are comparing it to the libraries listed below
Sorting:
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆65Updated last month
- R implementation of GeneTrajectory☆65Updated last year
- Single cell omics biology annotations☆51Updated 5 months ago
- ☆54Updated 11 months ago
- Metacells - Single-cell RNA Sequencing Analysis☆111Updated last year
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Multi-omic velocity inference☆111Updated 11 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆79Updated 6 months ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆122Updated 3 weeks ago
- Gene group activity utility functions for Scanpy☆90Updated 9 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆64Updated 2 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆87Updated 4 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆74Updated 7 months ago
- ☆46Updated last year
- Predict RNA velocity through deep learning☆70Updated last year
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆49Updated 8 months ago
- Spatial transcriptomics of heart tissue☆95Updated last year
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference☆26Updated 10 months ago
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- inferring regulatory cellular dynamics☆56Updated last week
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- Single-cell Lung Cancer Atlas with 1.2M cells☆68Updated 8 months ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆113Updated last year
- Geometry-preserving random sampling☆89Updated 11 months ago
- Unified access to several second-generation deconvolution methods☆78Updated last month
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆103Updated this week
- ☆26Updated last year
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 4 months ago
- Single-Cell Clustering Assessment Framework☆105Updated last year