Non-parametric density inference for single-cell analysis.
☆74Apr 10, 2026Updated 2 months ago
Alternatives and similar repositories for Mellon
Users that are interested in Mellon are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Aligning gene expression trajectories of single-cell reference and query systems☆88Aug 10, 2025Updated 10 months ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆28Jan 3, 2025Updated last year
- Automatically annotate cell types, consistently across samples.☆23Updated this week
- ☆33May 4, 2025Updated last year
- scVI extension for unspliced RNA☆15May 18, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆37Apr 2, 2025Updated last year
- ☆30Sep 29, 2025Updated 8 months ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆87Mar 19, 2026Updated 2 months ago
- Bayesian model for RNA velocity estimation of periodic manifolds☆35Jun 25, 2024Updated last year
- ☆43Jun 11, 2022Updated 4 years ago
- R implementation of GeneTrajectory☆71May 9, 2026Updated last month
- ☆51May 18, 2026Updated 3 weeks ago
- Python playground for cell-type-specific biology☆14Updated this week
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆190Mar 27, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆33Jan 30, 2026Updated 4 months ago
- trajectory inference☆109Jan 27, 2025Updated last year
- A modular tool for proportion analysis in single-cell sequencing data☆25Feb 26, 2026Updated 3 months ago
- Inferring multi-modality dynamics for single cell genomics data☆13Dec 18, 2025Updated 5 months ago
- Gene group activity utility functions for Scanpy☆107Dec 21, 2024Updated last year
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆254May 14, 2026Updated 3 weeks ago
- Metacells - Single-cell RNA Sequencing Analysis☆125Apr 20, 2026Updated last month
- ☆16Sep 29, 2023Updated 2 years ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆53Oct 31, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆65Sep 13, 2024Updated last year
- Spatial Single Cell transcriptomic library☆21Jan 15, 2026Updated 4 months ago
- This is the alpha version of the CellOracle package☆462Apr 30, 2026Updated last month
- Predict RNA velocity through deep learning☆72Dec 12, 2023Updated 2 years ago
- Single-cell dubious embedding detector (scDED): a statistical method for detecting dubious non-linear embeddings☆49May 14, 2025Updated last year
- ☆19May 5, 2024Updated 2 years ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆122Jan 22, 2024Updated 2 years ago
- A tool for semi-automatic cell type harmonization and integration☆120Mar 9, 2026Updated 3 months ago
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆501Apr 23, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Multi-omic velocity inference☆118Oct 23, 2024Updated last year
- Gene regulatory network inference for RNA velocity and pseudotime data☆29Nov 6, 2025Updated 7 months ago
- Feature selection for preserving biological trajectories in single-cell data☆22May 29, 2025Updated last year
- rapids-singlecell: GPU-accelerated framework for scRNA analysis☆374Updated this week
- Python implementation of Gene Trajectory☆30Sep 4, 2024Updated last year
- ☆30Mar 18, 2022Updated 4 years ago
- Single-cell perturbation analysis☆322Jun 3, 2026Updated last week