dpeerlab / SEACellsLinks
SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data
☆167Updated 5 months ago
Alternatives and similar repositories for SEACells
Users that are interested in SEACells are comparing it to the libraries listed below
Sorting:
- A Bayesian model for compositional single-cell data analysis☆173Updated 2 years ago
- Multiome GRN inference.☆127Updated last year
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆156Updated last month
- Metacells - Single-cell RNA Sequencing Analysis☆111Updated 11 months ago
- AUCell: score single cells with gene regulatory networks☆166Updated last year
- Conversion between scRNA-seq objects☆184Updated 2 weeks ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆132Updated 6 months ago
- LIANA: a LIgand-receptor ANalysis frAmework☆214Updated last year
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆130Updated last year
- Significance analysis for clustering single-cell RNA-sequencing data☆118Updated last year
- reticulate-free single cell format conversion☆184Updated last month
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆113Updated 7 months ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆76Updated 7 months ago
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆174Updated last year
- Multi-omic velocity inference☆110Updated 10 months ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆139Updated 2 years ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆167Updated last year
- scDIOR: Single cell data IO softwaRe☆146Updated 3 years ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆113Updated last year
- Analysis of cell-cell communication at single-cell resolution☆104Updated last year
- Efficient and precise single-cell reference atlas mapping with Symphony☆108Updated 2 years ago
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆142Updated last month
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆168Updated last week
- Detect doublets in single-cell RNA-seq data☆155Updated 4 years ago
- Direct estimation of mean and covariance from single cell RNA seq experiments