dpeerlab / SEACellsLinks
SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data
☆175Updated 9 months ago
Alternatives and similar repositories for SEACells
Users that are interested in SEACells are comparing it to the libraries listed below
Sorting:
- A Bayesian model for compositional single-cell data analysis☆185Updated 2 years ago
- Metacells - Single-cell RNA Sequencing Analysis☆116Updated last year
- Multiome GRN inference.☆131Updated last year
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆185Updated this week
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆137Updated 10 months ago
- Conversion between scRNA-seq objects☆195Updated 2 weeks ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆178Updated 5 months ago
- AUCell: score single cells with gene regulatory networks☆180Updated last year
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆141Updated 2 years ago
- Significance analysis for clustering single-cell RNA-sequencing data☆124Updated last year
- Multi-omic velocity inference☆113Updated last year
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆243Updated 11 months ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆80Updated 11 months ago
- LIANA: a LIgand-receptor ANalysis frAmework☆227Updated last year
- Direct estimation of mean and covariance from single cell RNA seq experiments☆126Updated 8 months ago
- reticulate-free single cell format conversion☆201Updated last week
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆169Updated last year
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆179Updated 3 weeks ago
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆152Updated 5 months ago
- A tool for semi-automatic cell type harmonization and integration☆117Updated 2 months ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆78Updated 3 weeks ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆116Updated last year
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆119Updated 2 months ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆147Updated 2 years ago
- Analysis of cell-cell communication at single-cell resolution☆105Updated last year
- ☆87Updated this week
- scDIOR: Single cell data IO softwaRe☆152Updated 3 years ago
- Detect doublets in single-cell RNA-seq data☆160Updated 5 years ago
- Python implementation of Milo for differential abundance testing on KNN graph☆79Updated 10 months ago
- Spatial transcriptomics of heart tissue☆106Updated 2 years ago