☆40Jan 26, 2026Updated last month
Alternatives and similar repositories for Concord
Users that are interested in Concord are comparing it to the libraries listed below
Sorting:
- scVI extension for unspliced RNA☆16May 18, 2025Updated 9 months ago
- Spot pseudo-Imager on top of histology☆44Dec 12, 2025Updated 2 months ago
- Single-cell dubious embedding detector (scDED): a statistical method for detecting dubious non-linear embeddings☆48May 14, 2025Updated 9 months ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Mar 25, 2024Updated last year
- scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis☆11Jul 29, 2023Updated 2 years ago
- SkewC a novel quality-assessment method to identify poor quality single-cells in scRNA-seq experiments. The method relies on the measure …☆10Aug 2, 2023Updated 2 years ago
- ☆14Oct 24, 2025Updated 4 months ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆82Updated this week
- Aligning gene expression trajectories of single-cell reference and query systems☆83Aug 10, 2025Updated 6 months ago
- Non-parametric density inference for single-cell analysis.☆73May 22, 2025Updated 9 months ago
- Reproducibility Repo for mvTCR paper☆13Apr 2, 2024Updated last year
- Single Cell Pretrained Regulatory network INference from Transcripts☆11Sep 17, 2024Updated last year
- SelectiOn in PRotein ANnotated regiOns. Adapted dN/dS based method to detect selection in specific protein regions☆11May 2, 2024Updated last year
- Self-supervised representation learning combining GTEx histology, RNA-seq and WGS☆33Apr 9, 2025Updated 10 months ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆54Oct 31, 2024Updated last year
- Join subcellular Visium HD bins into cells☆137Nov 4, 2025Updated 3 months ago
- Code for spatial subclone paper☆16Jan 23, 2025Updated last year
- A set of Pyro models and functions to infer CNA from scRNA-seq data☆11Aug 14, 2023Updated 2 years ago
- ☆13Jan 24, 2024Updated 2 years ago
- cell type specific, trait-associated gene regulation☆29Mar 31, 2025Updated 11 months ago
- ☆16Sep 1, 2023Updated 2 years ago
- Cell level integrated analysis of tissue histology and spatial transcriptomics☆31Oct 6, 2025Updated 4 months ago
- single-cell Contamination Detection and Correction☆16Jan 15, 2025Updated last year
- ☆19Mar 31, 2023Updated 2 years ago
- Code for paper "Principled feature attribution for unsupervised gene expression analysis"☆12Mar 7, 2023Updated 2 years ago
- ☆40Jul 14, 2023Updated 2 years ago
- scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism☆18Oct 17, 2024Updated last year
- ☆17Jul 12, 2024Updated last year
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Apr 20, 2024Updated last year
- This repository contains codes used for the human fetal limb cell atlas.☆17Jan 28, 2025Updated last year
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆18May 11, 2023Updated 2 years ago
- python API to the CoGAPS NMF package☆19May 19, 2025Updated 9 months ago
- ☆20Jan 10, 2025Updated last year
- Trends in single cell papers☆17Sep 23, 2024Updated last year
- ☆15Aug 17, 2023Updated 2 years ago
- ☆38Feb 27, 2020Updated 6 years ago
- R tools for analysis and visualization of single-cell subclustering data☆17Sep 9, 2025Updated 5 months ago
- ☆24Oct 1, 2025Updated 5 months ago
- INTERSTELLAR: Interpretation, scalable transformation, and emulation of large-scale sequencing reads☆17May 22, 2024Updated last year