Alternatives and similar repositories for CellAgentChat

Users that are interested in CellAgentChat are comparing it to the libraries listed below

• WPZgithub / CEFCON
  Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data
  ☆24Updated 8 months ago
• Roy-lab / scMTNI
  ☆27Updated last week
• QuKunLab / MultiomeBenchmarking
  ☆49Updated 4 months ago
• xiaoyeye / TFvelo
  ☆45Updated last year
• ZJUFanLab / scSpace
  an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…
  ☆23Updated 2 years ago
• madilabcode / scNET
  ☆45Updated last week
• lanagarmire / Single-cell-drug-repositioning
  ☆16Updated last year
• bowang-lab / DeepVelo
  ☆47Updated last year
• OSU-BMBL / scDEAL
  Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data
  ☆54Updated 11 months ago
• yjgeno / GenKI
  ☆15Updated last year
• kunwang34 / PhyloVelo
  PhyloVelo, Phylogeny-based transcriptomic velocity of single cells
  ☆43Updated last year
• ZJUFanLab / scNiche
  a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution
  ☆34Updated 2 months ago
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆79Updated 6 months ago
• decomverse / ACTIONet
  ACTIONet single-cell analysis framework
  ☆42Updated 10 months ago
• YosefLab / velovi
  ☆40Updated last week
• theislab / scTab
  ☆59Updated 10 months ago
• ZJUFanLab / scRank
  A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…
  ☆50Updated last month
• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆70Updated last year
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆67Updated 2 years ago
• JiangBioLab / DeepTalk
  Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…
  ☆25Updated 10 months ago
• lanagarmire / Asgard
  ☆43Updated last year
• tabdelaal / SpaGE
  Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data
  ☆36Updated last year
• theislab / scArches-reproducibility
  Reproducing result from the paper
  ☆34Updated 4 years ago
• yutongo / TIGON
  ☆46Updated 3 months ago
• cliffren / PENCIL
  PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.
  ☆28Updated last year
• Durenlab / LINGER
  ☆108Updated last month
• KlugerLab / GeneTrajectory-python
  Python implementation of Gene Trajectory
  ☆25Updated 10 months ago
• LungCellAtlas / HLCA_reproducibility
  This repository contains all code used for the Human Lung Cell Atlas project.
  ☆51Updated last year
• datapplab / AutoClass
  ☆44Updated 3 years ago
• kaizhang / single-cell-benchmark
  ☆10Updated last year