mcgilldinglab / CellAgentChat
Python agent-based model tool for inference, visualization and analysis of cell-cell communication from single-cell data
☆29Updated last month
Alternatives and similar repositories for CellAgentChat:
Users that are interested in CellAgentChat are comparing it to the libraries listed below
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆23Updated 6 months ago
- ☆43Updated last month
- ☆25Updated 3 months ago
- ☆44Updated 11 months ago
- an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…☆22Updated last year
- ☆37Updated last month
- ☆42Updated last year
- A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…☆22Updated last week
- a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution☆26Updated 2 months ago
- inferring regulatory cellular dynamics☆36Updated 3 weeks ago
- ☆32Updated last month
- Python implementation of Gene Trajectory☆25Updated 7 months ago
- Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data☆54Updated 9 months ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year
- Whole mouse brain snATAC seq analysis☆25Updated last week
- Co-accessibility network from single-cell ATAC-seq data. Python code, based on Cicero package (R).☆21Updated last week
- ☆39Updated last week
- Tools for sgRNA calling in direct capture Perturb-seq data☆32Updated last year
- ACTIONet single-cell analysis framework☆38Updated 7 months ago
- scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism☆13Updated 6 months ago
- A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…☆45Updated 8 months ago
- ☆14Updated last year
- Gene group activity utility functions for Scanpy☆72Updated 4 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆40Updated 3 months ago
- SIMBA: SIngle-cell eMBedding Along with features☆19Updated 11 months ago
- Predict RNA velocity through deep learning☆68Updated last year
- PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.☆28Updated last year
- Reproducing result from the paper☆33Updated 3 years ago
- Additional code and analysis from the single-cell integration benchmarking project☆60Updated 2 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆38Updated 7 months ago