mcgilldinglab / CellAgentChatLinks
Python agent-based model tool for inference, visualization and analysis of cell-cell communication from single-cell data
☆33Updated last month
Alternatives and similar repositories for CellAgentChat
Users that are interested in CellAgentChat are comparing it to the libraries listed below
Sorting:
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆25Updated 10 months ago
- ☆30Updated last month
- ☆45Updated last year
- ☆50Updated 6 months ago
- an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…☆23Updated 2 years ago
- ☆53Updated last week
- ☆48Updated 5 months ago
- ☆44Updated last year
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆26Updated last year
- PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.☆28Updated last year
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆33Updated 2 years ago
- a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution☆39Updated last month
- SIMBA: SIngle-cell eMBedding Along with features☆19Updated last year
- Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data☆55Updated last year
- Predict RNA velocity through deep learning☆70Updated last year
- Python implementation of Gene Trajectory☆26Updated last year
- A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…☆25Updated 3 months ago
- Unagi: Deep Generative Model for Deciphering Cellular Dynamics and In-Silico Drug Discovery in Complex Diseases.☆32Updated 2 months ago
- ACTIONet single-cell analysis framework☆42Updated last year
- ☆16Updated last year
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated this week
- ☆32Updated 5 months ago
- ☆59Updated last year
- ☆40Updated this week
- The benchmarking of spatial transcriptomics deconvolution methods☆32Updated 2 years ago
- A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…☆53Updated 3 months ago
- ☆16Updated last year
- R implementation of GeneTrajectory☆65Updated last year
- Gene group activity utility functions for Scanpy☆87Updated 8 months ago
- ☆114Updated 3 months ago