mcgilldinglab / CellAgentChatLinks
Python agent-based model tool for inference, visualization and analysis of cell-cell communication from single-cell data
☆35Updated 2 months ago
Alternatives and similar repositories for CellAgentChat
Users that are interested in CellAgentChat are comparing it to the libraries listed below
Sorting:
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆29Updated last year
- ☆51Updated 11 months ago
- ☆32Updated 6 months ago
- Deep fusion of spatial transcriptomics and histology images for interpretable high-definition embedding mapping☆17Updated this week
- Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data☆59Updated last year
- A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…☆26Updated 8 months ago
- ☆47Updated last year
- ☆59Updated 2 weeks ago
- ☆45Updated 2 years ago
- ☆27Updated last year
- an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…☆23Updated 2 years ago
- Predict RNA velocity through deep learning☆72Updated 2 years ago
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆27Updated last year
- a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution☆50Updated 5 months ago
- ACTIONet single-cell analysis framework☆44Updated last year
- UNAGI: deep generative AI for virtual disease and unsuperivsed in-silico perturbations.☆49Updated 2 weeks ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆32Updated 2 years ago
- ☆41Updated 3 weeks ago
- Additional code and analysis from the single-cell integration benchmarking project☆71Updated 3 years ago
- ☆40Updated 3 years ago
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆77Updated last year
- ☆52Updated 10 months ago
- SIMBA: SIngle-cell eMBedding Along with features☆20Updated last month
- scGCN is a graph convolutional networks algorithm for knowledge transfer in single cell omics☆40Updated 3 years ago
- Spatial direct messaging detected by bivariate Moran☆32Updated 6 months ago
- Flow2Spatial reconstructs spatial proteomics through transfer learning.☆23Updated 8 months ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated 4 months ago
- ☆52Updated 3 weeks ago
- ☆52Updated 4 months ago
- SIMBA: SIngle-cell eMBedding Along with features☆66Updated last year