mcgilldinglab / CellAgentChatLinks
Python agent-based model tool for inference, visualization and analysis of cell-cell communication from single-cell data
☆33Updated last week
Alternatives and similar repositories for CellAgentChat
Users that are interested in CellAgentChat are comparing it to the libraries listed below
Sorting:
- ☆30Updated 4 months ago
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆26Updated last year
- ☆50Updated 9 months ago
- SIMBA: SIngle-cell eMBedding Along with features☆20Updated last year
- ☆40Updated last week
- ☆46Updated last year
- ☆50Updated 8 months ago
- ACTIONet single-cell analysis framework☆44Updated last year
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆27Updated last year
- an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…☆23Updated 2 years ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated 2 months ago
- Predict RNA velocity through deep learning☆71Updated last year
- a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution☆44Updated 3 months ago
- An optimal transport-based algorithm for inferring cell trajectories of spatial transcriptomics.☆33Updated 8 months ago
- ☆44Updated last year
- Learning meaningful representations of genes☆19Updated 5 months ago
- ☆58Updated 2 months ago
- ☆46Updated last year
- ☆119Updated 6 months ago
- Flow2Spatial reconstructs spatial proteomics through transfer learning.☆22Updated 6 months ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆33Updated 2 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 10 months ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆42Updated last year
- ☆15Updated 5 months ago
- UNAGI: deep generative AI for virtual disease and unsuperivsed in-silico perturbations.☆43Updated 3 weeks ago
- ☆17Updated last year
- Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data☆57Updated last year
- A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…☆25Updated 6 months ago
- Additional code and analysis from the single-cell integration benchmarking project☆69Updated 2 years ago
- Python implementation of Gene Trajectory☆30Updated last year