lamanno-epfl / velocycleLinks
Bayesian model for RNA velocity estimation of periodic manifolds
☆33Updated last year
Alternatives and similar repositories for velocycle
Users that are interested in velocycle are comparing it to the libraries listed below
Sorting:
- ☆26Updated last year
- Non-parametric density inference for single-cell analysis.☆72Updated 4 months ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆40Updated last year
- ☆40Updated this week
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆79Updated 6 months ago
- SCENIC+ analyses☆17Updated 2 years ago
- ☆30Updated 6 months ago
- ☆54Updated 11 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 4 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Benchmark of GRNs using the GRETA pipeline☆28Updated this week
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆50Updated 11 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆64Updated 2 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 8 months ago
- Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets☆40Updated 2 months ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆28Updated 2 years ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- ☆45Updated last year
- Gene group activity utility functions for Scanpy☆90Updated 9 months ago
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- ☆62Updated 2 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆65Updated last month
- Mapping the Functional Landscape of TCR Repertoire☆34Updated 3 years ago
- ScoMAP is an R package to spatially integrate single-cell omics data into virtual cells and infer enhancer-to-gene relationships.☆27Updated 4 years ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆122Updated 3 weeks ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 10 months ago
- R implementation of GeneTrajectory☆65Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆87Updated 4 months ago
- Single cell omics biology annotations☆51Updated 5 months ago