lamanno-epfl / velocycle
Bayesian model for RNA velocity estimation of periodic manifolds
☆32Updated 9 months ago
Alternatives and similar repositories for velocycle:
Users that are interested in velocycle are comparing it to the libraries listed below
- ☆26Updated last year
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆38Updated 6 months ago
- R implementation of GeneTrajectory☆58Updated last year
- Gene group activity utility functions for Scanpy☆71Updated 3 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆71Updated 3 weeks ago
- ☆44Updated 11 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆40Updated 3 months ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆43Updated 2 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆27Updated 4 months ago
- ☆40Updated 4 months ago
- ☆36Updated 6 months ago
- Non-parametric density inference for single-cell analysis.☆68Updated last month
- Pan-Cancer Single Cell Classifier☆66Updated 10 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆61Updated 11 months ago
- ☆27Updated 5 months ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆27Updated last year
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆57Updated 11 months ago
- ☆26Updated last year
- Single cell omics biology annotations☆51Updated last month
- ScoMAP is an R package to spatially integrate single-cell omics data into virtual cells and infer enhancer-to-gene relationships.☆27Updated 3 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆35Updated 4 years ago
- ☆39Updated this week
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- SCENIC+ analyses☆13Updated last year
- an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…☆22Updated last year
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆33Updated this week
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆17Updated 6 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆48Updated this week
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆35Updated 7 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆73Updated 11 months ago