lamanno-epfl / velocycleLinks
Bayesian model for RNA velocity estimation of periodic manifolds
☆34Updated last year
Alternatives and similar repositories for velocycle
Users that are interested in velocycle are comparing it to the libraries listed below
Sorting:
- Non-parametric density inference for single-cell analysis.☆74Updated 7 months ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆43Updated last year
- ☆40Updated last week
- Code, data and analysis for moslin.☆15Updated last year
- ☆46Updated last year
- ☆26Updated 2 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆39Updated 4 years ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆83Updated 9 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 11 months ago
- Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets☆41Updated 5 months ago
- ☆35Updated 9 months ago
- ☆40Updated 6 months ago
- ☆56Updated last year
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated 2 years ago
- CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements☆21Updated 2 months ago
- ACTIONet single-cell analysis framework☆44Updated last year
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated 2 years ago
- ☆44Updated last month
- ☆19Updated last year
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆53Updated last year
- This repository contains codes used for the human fetal limb cell atlas.☆17Updated 11 months ago
- Gene group activity utility functions for Scanpy☆99Updated last year
- scOpen: single-cell open chromatin analysis via NMF modelling☆28Updated 2 years ago
- R implementation of GeneTrajectory☆68Updated last year
- an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…☆23Updated 2 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆67Updated 5 months ago
- ☆27Updated 4 years ago
- Unified access to several second-generation deconvolution methods☆88Updated 2 weeks ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Updated 9 months ago