Bayesian model for RNA velocity estimation of periodic manifolds
☆35Jun 25, 2024Updated last year
Alternatives and similar repositories for velocycle
Users that are interested in velocycle are comparing it to the libraries listed below
Sorting:
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆86Mar 20, 2025Updated 11 months ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆22Jan 26, 2026Updated last month
- Variational Estimation of Latent Velocity from Expression with Time-resolution☆13May 30, 2024Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆83Aug 10, 2025Updated 6 months ago
- Non-parametric density inference for single-cell analysis.☆73May 22, 2025Updated 9 months ago
- ☆26Aug 15, 2023Updated 2 years ago
- Trends in single cell papers☆17Sep 23, 2024Updated last year
- analysis scripts related to Jin et al manuscript on scRNA seq in aging mouse brain☆22Jun 14, 2024Updated last year
- Learning meaningful representations of genes☆21Jul 7, 2025Updated 8 months ago
- R tools for analysis and visualization of single-cell subclustering data☆17Sep 9, 2025Updated 5 months ago
- An R package to process and analyze transcriptomic data☆19Jun 18, 2025Updated 8 months ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆34Apr 2, 2025Updated 11 months ago
- ☆63Aug 26, 2025Updated 6 months ago
- ☆33Jan 23, 2025Updated last year
- Weakly supervised learning uncovers phenotypic signatures in single-cell data☆38Dec 17, 2025Updated 2 months ago
- ☆14Oct 14, 2022Updated 3 years ago
- Network analyses of single cell-based digital twins for personalized treatment of inflammatory disease☆13Mar 23, 2024Updated last year
- ☆10Dec 8, 2023Updated 2 years ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11May 25, 2023Updated 2 years ago
- Landscape Single Cell Entropy☆21Aug 24, 2020Updated 5 years ago
- ☆47May 4, 2024Updated last year
- ☆41Jan 12, 2026Updated last month
- https://molecular-neurogenetics.github.io/truster/☆11Jul 14, 2025Updated 7 months ago
- Dynamical information enables inference of gene regulation at single-cell scale☆12Jun 9, 2025Updated 8 months ago
- R and MATLAB scripts for MAGICAL☆11Jun 26, 2024Updated last year
- Deposited codes for snMultiome in human cortex manuscript☆13Aug 12, 2024Updated last year
- Use hodge decomposition for trajectory analysis☆23Nov 12, 2025Updated 3 months ago
- ☆10Apr 28, 2023Updated 2 years ago
- Drug Response Estimation from single-cell Expression Profiles☆12Jan 5, 2024Updated 2 years ago
- Estimate the cis-regulatory activity of transposable element (TEs) subfamilies☆10Dec 15, 2023Updated 2 years ago
- inferring regulatory cellular dynamics☆64Jan 13, 2026Updated last month
- ☆13Feb 12, 2026Updated 3 weeks ago
- Code relating to http://dx.doi.org/10.2139/ssrn.4132721☆11Nov 24, 2022Updated 3 years ago
- Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcript…☆11Jan 15, 2024Updated 2 years ago
- Reproducible analyses for the NicheCompass manuscript☆13Jul 3, 2025Updated 8 months ago
- APAlyzer is a toolkit for bioinformatic analysis of alternative polyadenylation (APA) events using RNA sequencing data. Our main approach…☆12Dec 2, 2024Updated last year
- ☆12Apr 13, 2020Updated 5 years ago
- DOLPHIN: Advances Single-cell RNA-seq Analysis Beyond Gene-Level by Integrating Exon-Level Quantification and Junction Reads with Deep Ne…☆14Jul 16, 2025Updated 7 months ago
- ☆15Feb 28, 2025Updated last year