lamanno-epfl / velocycleLinks
Bayesian model for RNA velocity estimation of periodic manifolds
☆33Updated last year
Alternatives and similar repositories for velocycle
Users that are interested in velocycle are comparing it to the libraries listed below
Sorting:
- Non-parametric density inference for single-cell analysis.☆72Updated 2 months ago
- ☆40Updated last week
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆40Updated 10 months ago
- ☆27Updated 4 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆37Updated 4 years ago
- R implementation of GeneTrajectory☆62Updated last year
- ☆40Updated this week
- ☆53Updated 9 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆79Updated 4 months ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- Gene group activity utility functions for Scanpy☆83Updated 7 months ago
- Gene regulatory network inference for RNA velocity and pseudotime data☆27Updated 4 months ago
- ☆42Updated last month
- iterative clustering pipeline of big single cell datasets.☆33Updated 3 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- ☆26Updated last year
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 2 years ago
- This repository contains codes used for the human fetal limb cell atlas.☆16Updated 6 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆53Updated 2 months ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆48Updated 9 months ago
- ☆19Updated 3 years ago
- ☆45Updated last year
- Code, data and analysis for moslin.☆14Updated 9 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 8 months ago
- Single cell omics biology annotations☆51Updated 3 months ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- ☆60Updated 2 years ago
- Multi-modal single cell analysis pipelines☆59Updated 2 weeks ago
- ☆27Updated 10 months ago
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆36Updated 11 months ago