lamanno-epfl / velocycleLinks
Bayesian model for RNA velocity estimation of periodic manifolds
☆33Updated last year
Alternatives and similar repositories for velocycle
Users that are interested in velocycle are comparing it to the libraries listed below
Sorting:
- Non-parametric density inference for single-cell analysis.☆72Updated 3 months ago
- Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets☆39Updated last month
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆40Updated 11 months ago
- ☆40Updated last week
- scOpen: single-cell open chromatin analysis via NMF modelling☆28Updated 2 years ago
- ☆26Updated last year
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆79Updated 5 months ago
- ☆29Updated 6 months ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- ☆45Updated 2 months ago
- ☆45Updated last year
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 3 months ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- Gene group activity utility functions for Scanpy☆87Updated 8 months ago
- Functional Inference of Gene Regulation☆46Updated last year
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆38Updated 4 years ago
- Capybara: A computational tool to measure cell identity and fate transitions☆59Updated 3 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last year
- ☆54Updated 10 months ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆36Updated 2 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆87Updated 3 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆50Updated 10 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆41Updated 3 weeks ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 8 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆73Updated last month
- ScoMAP is an R package to spatially integrate single-cell omics data into virtual cells and infer enhancer-to-gene relationships.☆27Updated 3 years ago
- cell type specific, trait-associated gene regulation☆27Updated 5 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆64Updated 2 months ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago