Single-cell Mutual Information-based Network Engineering Ranger
☆24Aug 28, 2025Updated 8 months ago
Alternatives and similar repositories for scMINER
Users that are interested in scMINER are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R☆18Dec 18, 2024Updated last year
- Robust identification of perturbed cell types in single-cell RNA-seq data☆39Nov 10, 2025Updated 5 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆87Aug 10, 2025Updated 8 months ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆22Jan 15, 2023Updated 3 years ago
- Single-cell immune repertoire trajectory analysis in R☆12Aug 8, 2025Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- R package for pathway analysis in scRNA-seq data☆79Aug 17, 2024Updated last year
- R toolkit for inference and analysis of pathway-mediated cell-cell communication chain from single-cell transcriptomics☆38Mar 10, 2025Updated last year
- Ordering gene-expression and functional events in single-cell experiments☆30Mar 7, 2026Updated last month
- Code for the BRAIN Initiative Cell Census Network (BICCN) - RF1 Tilgner☆21May 1, 2024Updated last year
- Code for the paper "MetaQ: fast, scalable and accurate metacell inference via deep single-cell quantization"☆27Dec 7, 2024Updated last year
- ☆28Sep 29, 2025Updated 7 months ago
- ☆87Jun 29, 2024Updated last year
- An interpretable and flexible deep learning framework for single-T cell transcriptome and receptor analysis☆15Apr 5, 2025Updated last year
- Efficiently compute robust markers across single-cell datasets☆13Apr 21, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- gene regulatory network reconstruction from scRNA-Seq☆25Feb 10, 2022Updated 4 years ago
- iterative clustering pipeline of big single cell datasets.☆39Sep 5, 2025Updated 7 months ago
- FitDevo: accurate inference of single-cell developmental potential using sample-specific gene weight☆17Apr 7, 2024Updated 2 years ago
- ☆13Sep 18, 2017Updated 8 years ago
- Spatially-resolved Transcriptomics via Epitope Anchoring☆20Apr 1, 2024Updated 2 years ago
- CellPhy: accurate and fast probabilistic inference of single-cell phylogenies☆20Jan 8, 2026Updated 3 months ago
- Model-based Dimensionality Reduction for Single-cell RNA-seq with Generalized Bilinear Models☆14Jul 29, 2025Updated 9 months ago
- Code to go along with https://doi.org/10.1016/j.cell.2022.09.010☆21Mar 16, 2022Updated 4 years ago
- ☆21Sep 8, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆12Jan 8, 2026Updated 3 months ago
- scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing and spatial dat…☆299Updated this week
- ☆17Dec 18, 2023Updated 2 years ago
- Querying cellular states and programs by learning representations of gene sets☆16Nov 2, 2025Updated 5 months ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆46Apr 12, 2023Updated 3 years ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Feb 22, 2025Updated last year
- [Nature Machine Intelligence] ImmunoStruct enables multimodal deep learning for immunogenicity prediction☆44Mar 5, 2026Updated last month
- single-cell Contamination Detection and Correction☆18Jan 15, 2025Updated last year
- Extension of SpatialExperiment with sf☆57Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- fastCNV R package to detect putative CNVs in single cell and spatial transcriptomics data☆44Apr 1, 2026Updated 3 weeks ago
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆44Oct 10, 2025Updated 6 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆428Updated this week
- Single-cell analysis with non-negative matrix factorization☆48Jul 24, 2025Updated 9 months ago
- p-IgGen: A Generative Paired Antibody Language Model☆13May 6, 2025Updated 11 months ago
- Single-cell dubious embedding detector (scDED): a statistical method for detecting dubious non-linear embeddings☆48May 14, 2025Updated 11 months ago
- Methods to discover gene programs on single-cell data☆180Apr 1, 2026Updated 3 weeks ago