jyyulab / scMINERLinks
Single-cell Mutual Information-based Network Engineering Ranger
☆20Updated last week
Alternatives and similar repositories for scMINER
Users that are interested in scMINER are comparing it to the libraries listed below
Sorting:
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated last year
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆88Updated last month
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆36Updated 2 months ago
- Single-cell Case Control Analysis☆52Updated 9 months ago
- ☆41Updated 4 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 10 months ago
- ☆29Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆73Updated 2 weeks ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated last week
- cell type deconvolution for multi-condition bulk RNA-seq data☆27Updated 3 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆86Updated 2 months ago
- iterative clustering pipeline of big single cell datasets.☆33Updated this week
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 8 months ago
- ☆41Updated 4 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 2 months ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆37Updated 3 weeks ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆39Updated 3 years ago
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆30Updated 3 months ago
- ☆40Updated last week
- ☆47Updated last year
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆41Updated 3 years ago
- ☆50Updated 5 years ago
- R package for Flexible dot plots☆29Updated 3 years ago
- ☆58Updated last year
- ☆39Updated 4 years ago
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆24Updated last week