jyyulab / scMINERLinks
Single-cell Mutual Information-based Network Engineering Ranger
☆17Updated this week
Alternatives and similar repositories for scMINER
Users that are interested in scMINER are comparing it to the libraries listed below
Sorting:
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 7 months ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 6 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 6 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated 11 months ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆31Updated 3 months ago
- ☆29Updated 2 years ago
- ☆23Updated 2 weeks ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆26Updated 3 years ago
- ☆41Updated 4 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated this week
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆38Updated 3 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 7 months ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆20Updated 2 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated last week
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- ☆18Updated last month
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Updated 3 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- ☆13Updated last year
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 3 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Updated 2 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 2 months ago
- Ordering gene-expression and functional events in single-cell experiments☆22Updated last year
- Landscape Single Cell Entropy☆21Updated 4 years ago
- analysis script for GBM single cell RNA seq data☆18Updated 4 years ago
- A database of useful gene signatures for single-cell analysis☆25Updated 2 weeks ago
- ☆20Updated last year