azizilab / decipher
A single-cell analysis toolkit to jointly analyze samples from distinct conditions
☆27Updated 5 months ago
Alternatives and similar repositories for decipher:
Users that are interested in decipher are comparing it to the libraries listed below
- Gene regulatory network inference for RNA velocity and pseudotime data☆22Updated this week
- scVI extension for unspliced RNA☆16Updated last month
- A modular tool for proportion analysis in single-cell sequencing data☆18Updated 2 weeks ago
- Causal inference, differential expression, and co-expression for scRNA-seq☆18Updated 3 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 2 months ago
- Using BCR and expression for sequence embedding☆19Updated this week
- ☆23Updated 4 months ago
- ☆11Updated 2 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆36Updated last month
- ☆26Updated last year
- Multi-resolution Variational Inference☆22Updated this week
- Single cell omics biology annotations☆49Updated 3 weeks ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆14Updated 4 months ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated 5 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆36Updated 5 months ago
- ☆34Updated 4 months ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆45Updated last month
- cTPnet Package☆24Updated 2 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆47Updated last week
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆24Updated 2 years ago
- Single-cell Case Control Analysis☆48Updated 3 months ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆13Updated 3 months ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated last year
- High-definition modeling of chromatin + transcriptomics data☆21Updated 3 months ago
- ☆23Updated last month
- RNA velocity validation☆23Updated 2 years ago
- Mosaic single cell data integration using non-overlapping features☆36Updated 2 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Code for scKINETICS (ISMB 2023)☆21Updated last year
- ☆10Updated last year