azizilab / decipherLinks
A single-cell analysis toolkit to jointly analyze samples from distinct conditions
☆31Updated 3 months ago
Alternatives and similar repositories for decipher
Users that are interested in decipher are comparing it to the libraries listed below
Sorting:
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 6 months ago
- A modular tool for proportion analysis in single-cell sequencing data☆22Updated last month
- scVI extension for unspliced RNA☆16Updated last month
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 4 months ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago
- Information-based dimensionality reduction☆29Updated 6 months ago
- ☆13Updated 2 weeks ago
- Reproducibility notebooks for scPoli☆18Updated 2 years ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- ☆26Updated 4 months ago
- Single cell omics biology annotations☆51Updated 2 months ago
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆10Updated 2 years ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆33Updated 3 years ago
- ☆26Updated last year
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆25Updated 6 months ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated 10 months ago
- Code, data and analysis for moslin.☆13Updated 9 months ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆29Updated 7 months ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆48Updated 5 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆63Updated this week
- ☆40Updated this week
- A python package for chromVAR☆28Updated 2 years ago
- Spatial reconstruction of dissociated single-cell data☆18Updated last year
- Gene regulatory network inference for RNA velocity and pseudotime data☆27Updated 3 months ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆35Updated 2 years ago
- cell type specific, trait-associated gene regulation☆27Updated 3 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated last month
- ☆13Updated 2 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- ACTIONet single-cell analysis framework☆42Updated 9 months ago