Alternatives and similar repositories for decipher

Users that are interested in decipher are comparing it to the libraries listed below

• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆31Updated 10 months ago
• rs239 / velorama
  Gene regulatory network inference for RNA velocity and pseudotime data
  ☆27Updated 2 months ago
• loosolab / scanpro
  A modular tool for proportion analysis in single-cell sequencing data
  ☆24Updated 4 months ago
• theislab / mubind
  Learning motif contributions to cell transitions using sequence features and graphs.
  ☆28Updated last year
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆41Updated last year
• theislab / cross_system_integration
  ☆13Updated 4 months ago
• pachterlab / CGCCP_2023
  scVI extension for unspliced RNA
  ☆16Updated 8 months ago
• potulabe / symphonypy
  Port of symphony algorithm of single-cell reference atlas mapping to Python
  ☆33Updated last month
• theislab / ncem_tutorials
  ☆13Updated 3 years ago
• ajaynadig / TRADEtools
  ☆35Updated 10 months ago
• theislab / moslin
  Code, data and analysis for moslin.
  ☆15Updated last year
• GreenleafLab / brainchromatin
  Code used to analyze single cell RNA and ATAC sequencing in developing human brain
  ☆35Updated 4 years ago
• bendemeo / shannonca
  Information-based dimensionality reduction
  ☆29Updated last year
• jzhoulab / quasildr
  Quasilinear data representations for single-cell omics data analysis
  ☆43Updated 2 years ago
• Teichlab / snp2cell
  cell type specific, trait-associated gene regulation
  ☆29Updated 9 months ago
• const-ae / pyLemur
  A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.
  ☆27Updated last year
• doraadong / TraSig
  Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data
  ☆25Updated 3 years ago
• caleblareau / maegatk
  Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
  ☆24Updated 2 years ago
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆51Updated 8 months ago
• LouisFaure / scFates
  a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
  ☆65Updated this week
• shmohammadi86 / ACTIONet
  ACTIONet single-cell analysis framework
  ☆44Updated last year
• KlugerLab / GeneTrajectory-python
  Python implementation of Gene Trajectory
  ☆30Updated last year
• raphael-group / CalicoST
  Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics
  ☆45Updated 5 months ago
• PeterZZQ / CellPath
  ☆20Updated 3 years ago
• jranek / EVI
  Integrating temporal gene expression modalities for trajectory inference and disease prediction
  ☆10Updated 3 years ago
• MarioniLab / StabMap
  Mosaic single cell data integration using non-overlapping features
  ☆37Updated 3 years ago
• ratschlab / scim
  Code for Universal Single-Cell Matching with Unpaired Feature Sets
  ☆22Updated 4 years ago
• theislab / scPoli_reproduce
  Reproducibility notebooks for scPoli
  ☆21Updated 2 years ago
• satijalab / Mixscale
  ☆23Updated 3 months ago
• MagpiePKU / EpiTrace
  Cell age determination by scATAC-seq and bulk-ATAC-seq
  ☆32Updated last year