A single-cell analysis toolkit to jointly analyze samples from distinct conditions
☆37Apr 2, 2025Updated last year
Alternatives and similar repositories for decipher
Users that are interested in decipher are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16Sep 1, 2023Updated 2 years ago
- ☆13Nov 3, 2023Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆89Aug 10, 2025Updated 11 months ago
- Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)☆26Jun 12, 2026Updated last month
- Code, data and analysis for moslin.☆15Oct 7, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Gene Expression Decomposition and Integration☆21Feb 9, 2026Updated 5 months ago
- Pairwise Hierarchical Model☆20Mar 11, 2022Updated 4 years ago
- Code and example of the D-SPIN framework☆39May 12, 2026Updated 2 months ago
- Non-parametric density inference for single-cell analysis.☆75Jun 29, 2026Updated 3 weeks ago
- ☆13Aug 9, 2022Updated 3 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Jan 11, 2025Updated last year
- ☆34Apr 3, 2026Updated 3 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Mar 7, 2025Updated last year
- ☆39Apr 16, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Consensus peaks of chromatin accessibility in the human genome☆18Dec 1, 2025Updated 7 months ago
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆257Mar 14, 2026Updated 4 months ago
- cell type specific, trait-associated gene regulation☆30Mar 31, 2025Updated last year
- Bayesian model for RNA velocity estimation of periodic manifolds☆35Jun 25, 2024Updated 2 years ago
- ☆67Sep 13, 2024Updated last year
- Single cell omics biology annotations☆60Jul 7, 2026Updated last week
- Querying cellular states and programs by learning representations of gene sets☆16Nov 2, 2025Updated 8 months ago
- R package for gene selection using k-NN graphs.☆14Jun 12, 2023Updated 3 years ago
- ☆35Mar 16, 2026Updated 4 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆87Apr 21, 2025Updated last year
- scVI extension for unspliced RNA☆15May 18, 2025Updated last year
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆87Mar 20, 2025Updated last year
- Context specific and dynamic gene regulatory network reconstruction and analysis☆129Jun 22, 2026Updated 3 weeks ago
- ☆10Apr 28, 2023Updated 3 years ago
- Network analyses of single cell-based digital twins for personalized treatment of inflammatory disease☆16Mar 23, 2024Updated 2 years ago
- ☆17Jul 8, 2024Updated 2 years ago
- Scripts from the GBM cellular states paper☆21Feb 24, 2021Updated 5 years ago
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆201Jan 30, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism☆18Oct 17, 2024Updated last year
- Weakly supervised learning uncovers phenotypic signatures in single-cell data☆41Jun 7, 2026Updated last month
- single-cell decorrelated module networks☆33Aug 24, 2024Updated last year
- python API to the CoGAPS NMF package☆21May 19, 2025Updated last year
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆12Nov 15, 2024Updated last year
- scTriangulate is a Python package to mix-and-match conflicting clustering results in single cell analysis and generate reconciled cluster…☆38Mar 30, 2026Updated 3 months ago
- A Python package for unsupervised analysis of spatial (prote)omics data.☆17Updated this week