azizilab / decipherLinks
A single-cell analysis toolkit to jointly analyze samples from distinct conditions
☆30Updated 2 months ago
Alternatives and similar repositories for decipher
Users that are interested in decipher are comparing it to the libraries listed below
Sorting:
- scVI extension for unspliced RNA☆16Updated last month
- ☆25Updated 3 months ago
- A modular tool for proportion analysis in single-cell sequencing data☆22Updated last month
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆25Updated 5 months ago
- ☆13Updated 2 years ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆48Updated 5 months ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆28Updated 6 months ago
- CAST package☆40Updated 7 months ago
- A python package for chromVAR☆28Updated 2 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 5 months ago
- Spatial direct messaging detected by bivariate Moran☆27Updated last month
- Multi-resolution Variational Inference☆22Updated 2 months ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆13Updated 8 months ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- A method for analyzing scATAC-seq experiments.☆31Updated 3 months ago
- ☆21Updated 3 years ago
- Spatial reconstruction of dissociated single-cell data☆18Updated last year
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆52Updated 3 weeks ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆33Updated 3 years ago
- An end-to-end computational pipeline for large Perturb-seq screens☆13Updated last month
- Single cell omics biology annotations☆51Updated 2 months ago
- ☆13Updated 2 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 3 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated 3 weeks ago
- Information-based dimensionality reduction☆29Updated 6 months ago
- ☆38Updated 8 months ago
- cell type specific, trait-associated gene regulation☆27Updated 2 months ago
- ☆18Updated 10 months ago
- ☆26Updated last year