azizilab / decipher
A single-cell analysis toolkit to jointly analyze samples from distinct conditions
☆29Updated last month
Alternatives and similar repositories for decipher:
Users that are interested in decipher are comparing it to the libraries listed below
- ☆17Updated last month
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated 8 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆40Updated 3 months ago
- ☆12Updated last month
- A modular tool for proportion analysis in single-cell sequencing data☆19Updated 3 months ago
- scVI extension for unspliced RNA☆16Updated 3 months ago
- Benchmark of GRNs using the GRETA pipeline☆24Updated last month
- CAST package☆34Updated 6 months ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆25Updated 4 months ago
- Information-based dimensionality reduction☆29Updated 4 months ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆21Updated 3 years ago
- Pipeline to run scE2G☆24Updated last week
- ☆26Updated last year
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- High-definition modeling of chromatin + transcriptomics data☆23Updated 3 weeks ago
- ☆13Updated 2 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆49Updated this week
- Reproducibility notebooks for scPoli☆16Updated 2 years ago
- Multi-resolution Variational Inference☆22Updated last month
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆46Updated 3 months ago
- Spatial reconstruction of dissociated single-cell data☆17Updated last year
- Gene regulatory network inference for RNA velocity and pseudotime data☆26Updated last month
- An end-to-end computational pipeline for large Perturb-seq screens☆13Updated last week
- Projecting RNA measurements onto single cell atlases to extract cell type-specific expression profiles using scProjection☆13Updated last year
- ☆12Updated this week
- cTPnet Package☆25Updated 2 years ago
- A method for analyzing scATAC-seq experiments.☆30Updated 2 months ago
- A python package for chromVAR☆27Updated 2 years ago
- Code, data and analysis for moslin.☆12Updated 6 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆42Updated last year