azizilab / decipherLinks
A single-cell analysis toolkit to jointly analyze samples from distinct conditions
☆34Updated 8 months ago
Alternatives and similar repositories for decipher
Users that are interested in decipher are comparing it to the libraries listed below
Sorting:
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 11 months ago
- Gene regulatory network inference for RNA velocity and pseudotime data☆27Updated last month
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Updated 9 months ago
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- A modular tool for proportion analysis in single-cell sequencing data☆24Updated 3 months ago
- ☆13Updated 3 months ago
- scVI extension for unspliced RNA☆16Updated 7 months ago
- Code, data and analysis for moslin.☆15Updated last year
- ☆35Updated 9 months ago
- A python package for chromVAR☆31Updated 2 years ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆33Updated last week
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆23Updated last year
- Information-based dimensionality reduction☆29Updated last year
- Single cell omics biology annotations☆51Updated 7 months ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆13Updated last year
- ☆20Updated 3 years ago
- ACTIONet single-cell analysis framework☆44Updated last year
- Pipeline to run scE2G☆32Updated last month
- cell type specific, trait-associated gene regulation☆29Updated 8 months ago
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆10Updated 3 years ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆34Updated 3 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆42Updated last year
- Non-parametric density inference for single-cell analysis.☆74Updated 6 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated 3 months ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆27Updated 11 months ago
- ☆44Updated last month
- Tools for sgRNA calling in direct capture Perturb-seq data☆39Updated 2 years ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆56Updated last year