Alternatives and similar repositories for scDist

Users that are interested in scDist are comparing it to the libraries listed below

• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆81Updated 6 months ago
• yingyonghui / CommPath
  R toolkit for inference and analysis of pathway-mediated cell-cell communication chain from single-cell transcriptomics
  ☆38Updated 11 months ago
• HectorRDB / condiments
  Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
  ☆29Updated last year
• jlaffy / infercna
  Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data
  ☆46Updated 2 years ago
• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆92Updated last month
• HaojiaWu / plot1cell
  A R package for advanced single cell data viz
  ☆73Updated 5 months ago
• aet21 / SCENT
  Estimation of Single-Cell Potency with Single Cell Entropy
  ☆44Updated 2 years ago
• ZJUFanLab / CellTalkDB
  A manually curated database of literature-supported ligand-receptor interactions in human and mouse
  ☆32Updated last year
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆32Updated 4 years ago
• Janezjz / cellanova
  CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration
  ☆54Updated last year
• califano-lab / single-cell-pipeline
  ☆50Updated 6 years ago
• arc85 / singleseqgset
  Gene set enrichment analysis for single-cell RNAseq data
  ☆31Updated 2 years ago
• alserglab / mascarade
  Generate masks for scRNA-seq clusters on t-SNE or UMAP plots
  ☆45Updated last week
• cbib / Seurat-Integrate
  R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…
  ☆31Updated 5 months ago
• guokai8 / scGSVA
  scGSVA: Perform GSVA for single cell RNA seq
  ☆70Updated last week
• zijianni / SpotClean
  R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data
  ☆35Updated 3 weeks ago
• liziyie / scDVA
  An R shiny based tool used for single cell RNA-seq data visualization and analysis.
  ☆34Updated 5 years ago
• arc85 / celltalker
  Inference of cell-cell communication from single-cell RNAseq data
  ☆49Updated 9 months ago
• PaulingLiu / metaICB
  ☆22Updated 2 years ago
• jackbibby1 / SCPA
  R package for pathway analysis in scRNA-seq data
  ☆77Updated last year
• KlugerLab / DAseq
  ☆41Updated 4 years ago
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆31Updated 3 years ago
• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆51Updated last year
• jumphone / Vector
  Unsupervised Inference of Developmental Directions for Single Cells
  ☆23Updated 2 years ago
• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆98Updated 8 months ago
• campbio / decontX
  Methods for decontamination of single cell data
  ☆56Updated 11 months ago
• rbpatt2019 / chooseR
  An R framework for choosing clustering parameters in scRNA-seq analysis pipelines
  ☆36Updated 5 years ago
• califano-lab / PISCES
  R package for Protein activity analysis of single-cell RNAseq.
  ☆87Updated 3 years ago
• KramannLab / visium_heart
  Spatial transcriptomics of heart tissue
  ☆28Updated 3 years ago
• LungCellAtlas / scRNAseq_pipelines
  Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas
  ☆39Updated 5 years ago