phillipnicol / scDistLinks
Robust identification of perturbed cell types in single-cell RNA-seq data
☆31Updated 7 months ago
Alternatives and similar repositories for scDist
Users that are interested in scDist are comparing it to the libraries listed below
Sorting:
- Aligning gene expression trajectories of single-cell reference and query systems☆68Updated 8 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 7 months ago
- Gene set enrichment analysis for single-cell RNAseq data☆28Updated 2 years ago
- Functions for single cell data analysis☆32Updated 4 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated last year
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆37Updated 4 years ago
- Unsupervised Inference of Developmental Directions for Single Cells☆22Updated last year
- cell type deconvolution for multi-condition bulk RNA-seq data☆27Updated 3 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆41Updated last year
- R toolkit for inference and analysis of pathway-mediated cell-cell communication chain from single-cell transcriptomics☆35Updated 4 months ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆41Updated 2 years ago
- A High Effect Marker Gene Search Tool for Single-cell RNA-seq Analysis☆32Updated 9 months ago
- Hierarchical Cell Annotation☆20Updated 7 months ago
- Spatial transcriptomics of heart tissue☆22Updated 3 years ago
- Feature Ranking in (possibly large) Clustered Single Cell Data☆40Updated 4 years ago
- ☆41Updated 4 years ago
- Single-Cell Inference of Class Switch Recombination☆19Updated 3 months ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆33Updated last year
- MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…☆22Updated last year
- R tools for analysis and visualization of single-cell subclustering data☆17Updated last year
- An R shiny based tool used for single cell RNA-seq data visualization and analysis.☆33Updated 4 years ago
- A R package for advanced single cell data viz☆67Updated last year
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆11Updated 9 months ago
- R package gathering a set of wrappers to apply various integration methods to Seurat objects (and rate such methods)☆27Updated last month
- ☆22Updated 2 years ago
- ☆37Updated 2 years ago
- Methods for decontamination of single cell data☆47Updated 4 months ago
- Method for de novo mutation calling from droplet based single cell RNA seq data☆14Updated 3 years ago
- ☆29Updated 3 weeks ago