phillipnicol / scDistLinks
Robust identification of perturbed cell types in single-cell RNA-seq data
☆32Updated 9 months ago
Alternatives and similar repositories for scDist
Users that are interested in scDist are comparing it to the libraries listed below
Sorting:
- Aligning gene expression trajectories of single-cell reference and query systems☆73Updated 2 weeks ago
- Functions for single cell data analysis☆32Updated 4 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 8 months ago
- ☆50Updated 5 years ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆42Updated 2 years ago
- Methods for decontamination of single cell data☆47Updated 6 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆87Updated last month
- R toolkit for inference and analysis of pathway-mediated cell-cell communication chain from single-cell transcriptomics☆36Updated 5 months ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆42Updated last year
- Unsupervised Inference of Developmental Directions for Single Cells☆22Updated last year
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆38Updated 4 years ago
- Gene set enrichment analysis for single-cell RNAseq data☆28Updated 2 years ago
- scGSVA: Perform GSVA for single cell RNA seq☆64Updated 9 months ago
- Spatial transcriptomics of heart tissue☆22Updated 3 years ago
- An R shiny based tool used for single cell RNA-seq data visualization and analysis.☆33Updated 4 years ago
- A R package for advanced single cell data viz☆68Updated last year
- A High Effect Marker Gene Search Tool for Single-cell RNA-seq Analysis☆32Updated 11 months ago
- Hierarchical Cell Annotation☆24Updated 9 months ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆27Updated 4 years ago
- ☆41Updated 4 years ago
- ☆58Updated last year
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated last year
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆60Updated 2 years ago
- ☆27Updated last week
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 4 months ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆22Updated last year
- Accurate and fast cell marker gene identification with COSG☆62Updated 2 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆27Updated 3 years ago
- R package for pathway analysis in scRNA-seq data☆75Updated last year
- ☆37Updated 2 years ago