Alternatives and similar repositories for GEDI

Users that are interested in GEDI are comparing it to the libraries listed below

• Vivianstats / scINSIGHT
  Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
  ☆22Updated last year
• veltenlab / mitoClone
  ☆12Updated 4 years ago
• immunogenomics / cdr3-QTL
  Trans-association between HLA and TCR-CDR3
  ☆18Updated 2 years ago
• jacobhepkema / scover
  scover
  ☆23Updated last year
• BoevaLab / ANS_signature_scoring
  ANS_signature_scoring: A gene expression signature scoring Python package.
  ☆16Updated 2 weeks ago
• yizhak-lab-ccg / RNA_MUTECt_WMN
  ☆25Updated 3 years ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆43Updated last month
• GreenleafLab / ChrAccR
  Analyzing chromatin accessibility data in R
  ☆18Updated 2 years ago
• CyrilLagger / scDiffCom
  Difference in Intercellular Communication from scRNA-seq data
  ☆22Updated last year
• juliaolivieri / SpliZ_pipeline
  Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis
  ☆34Updated 3 years ago
• MarioniLab / geneBasisR
  R package for gene selection using k-NN graphs.
  ☆13Updated 2 years ago
• dbrg77 / ISSAAC-seq
  ☆17Updated 2 years ago
• aet21 / EpiSCORE
  Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles
  ☆33Updated 6 months ago
• JamesJoly / DGSEA
  An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…
  ☆14Updated 2 years ago
• ati-lz / HCA_Benchmarking
  This repository contains HCA Benchmarking codes
  ☆26Updated 5 years ago
• MarioniLab / StabMap
  Mosaic single cell data integration using non-overlapping features
  ☆37Updated 3 years ago
• davemcg / scEiaD
  Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas
  ☆26Updated last year
• eudoraleer / scasa
  SCASA: Single cell transcript quantification tool
  ☆21Updated last year
• cole-trapnell-lab / pseudospace
  ☆12Updated 6 years ago
• Core-Bioinformatics / ClustAssess
  Tools for assessing clustering robustness
  ☆25Updated 3 weeks ago
• single-cell-genetics / XClone
  Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.
  ☆38Updated 2 months ago
• skandlab / MutSpot
  ☆17Updated 2 years ago
• Sarah145 / CCPlotR
  An R package for visualising cell-cell interactions
  ☆43Updated last year
• natsuhiko / PHM
  Pairwise Hierarchical Model
  ☆20Updated 3 years ago
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated 7 months ago
• JinmiaoChenLab / FastIntegration
  FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
  ☆23Updated 11 months ago
• stephenslab / gbcd
  R package for generalized binary covariance decomposition.
  ☆10Updated 2 months ago
• BradBalderson / Cytocipher
  Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…
  ☆38Updated 2 years ago
• showteeth / GEfetch2R
  GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools
  ☆37Updated 5 months ago
• ChenWeiyan / LandSCENT
  Landscape Single Cell Entropy
  ☆20Updated 5 years ago