python API to the CoGAPS NMF package
☆21May 19, 2025Updated last year
Alternatives and similar repositories for pycogaps
Users that are interested in pycogaps are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Aligning gene expression trajectories of single-cell reference and query systems☆88Aug 10, 2025Updated 9 months ago
- scVI extension for unspliced RNA☆15May 18, 2025Updated last year
- End-guided RNA assembler☆15Dec 2, 2025Updated 5 months ago
- A single-cell transcriptomic analysis of endometriosis, endometriomas, eutopic endometrial samples and uninvolved ovary tissues highlight…☆18Jan 12, 2023Updated 3 years ago
- ☆12Dec 4, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆10Mar 11, 2025Updated last year
- CeLEry: cell location recovery in single-cell RNA sequencing☆37Feb 14, 2025Updated last year
- Comprehensive and scalable differential splicing analyses☆18Dec 19, 2025Updated 5 months ago
- identifying disease critical cell types and programs from single cell RNAseq☆58May 30, 2022Updated 3 years ago
- ☆16Sep 29, 2023Updated 2 years ago
- fast hierarchical clustering for large-scale single-cell data☆11Jul 11, 2021Updated 4 years ago
- ☆19Sep 20, 2021Updated 4 years ago
- ☆14Jan 24, 2024Updated 2 years ago
- ☆11Apr 25, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Reworked clustering metrics for assessing performance in imbalanced settings☆18Jun 3, 2024Updated last year
- scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis☆12Jul 29, 2023Updated 2 years ago
- R package for semi-supervised single-cell data integration☆98Jan 27, 2026Updated 3 months ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆36Nov 8, 2023Updated 2 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Aug 24, 2022Updated 3 years ago
- Variational Estimation of Latent Velocity from Expression with Time-resolution☆13May 30, 2024Updated last year
- ☆16Sep 1, 2023Updated 2 years ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated last year
- Mapping-free software for fishing relevant reads in an RNA-Seq sample☆19Dec 9, 2020Updated 5 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- R implementation of GeneTrajectory☆70May 9, 2026Updated last week
- Ultrafast method to compute single-sample gene set enrichment scores for gene expression or proteomics data☆24May 2, 2026Updated 2 weeks ago
- ☆29Sep 4, 2023Updated 2 years ago
- RNA-binding protein motif analysis☆11Sep 29, 2025Updated 7 months ago
- SIMBA: SIngle-cell eMBedding Along with features☆66Oct 16, 2024Updated last year
- ☆10May 31, 2022Updated 3 years ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆37Apr 2, 2025Updated last year
- ☆15Nov 17, 2025Updated 6 months ago
- Bayesian MCMC matrix factorization algorithm☆72Sep 19, 2025Updated 8 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism☆18Oct 17, 2024Updated last year
- ☆62Feb 13, 2026Updated 3 months ago
- single-cell Contamination Detection and Correction☆18Jan 15, 2025Updated last year
- Gene Set + S2G strategy annotations analyzed for disease architecture☆59Nov 18, 2022Updated 3 years ago
- R tools for analysis and visualization of single-cell subclustering data☆19May 1, 2026Updated 2 weeks ago
- From QC to summary statistics☆17Jun 27, 2020Updated 5 years ago
- Shape Changes In Selecting Sample Outliers in RNA-seq☆12Jul 3, 2022Updated 3 years ago