FertigLab / pycogaps
python API to the CoGAPS NMF package
☆16Updated 11 months ago
Related projects ⓘ
Alternatives and complementary repositories for pycogaps
- ☆30Updated 7 months ago
- ☆27Updated 3 months ago
- R tools for analysis and visualization of single-cell subclustering data☆12Updated 6 months ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆25Updated last month
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆17Updated 10 months ago
- Axolotl Regenerative Telencehpalon Interpretation via Spatiotemporal Transcriptomic Atlas☆17Updated 2 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆24Updated last month
- Spatial transcriptomics of heart tissue☆17Updated 2 years ago
- Network construction Algorithm☆18Updated 2 months ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆26Updated last year
- Calculate cluster similarity between clusters from different single cell datasets/batches/samples.☆17Updated 4 months ago
- AD regulome analysis☆11Updated last year
- ☆15Updated 5 months ago
- R package of CSOmap(developing☆14Updated 2 years ago
- ☆14Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆46Updated last month
- code for data processing and visualisation associated with the stromal subclasses manuscript☆11Updated 4 years ago
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆14Updated last year
- ☆20Updated last year
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆20Updated 2 weeks ago
- Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel☆15Updated 2 years ago
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆9Updated last year
- ☆15Updated last year
- Functions for single cell data analysis☆27Updated 3 years ago
- ☆22Updated last year
- Inferring CNV data from single cell ATAC seq☆22Updated 9 months ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆26Updated this week
- Accurate and fast cell marker gene identification with COSG☆38Updated last year
- ☆17Updated last year
- ☆40Updated 3 months ago