ShobiStassen / VIALinks
trajectory inference
☆100Updated 4 months ago
Alternatives and similar repositories for VIA
Users that are interested in VIA are comparing it to the libraries listed below
Sorting:
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆68Updated last month
- Methods to discover gene programs on single-cell data☆117Updated last month
- Direct estimation of mean and covariance from single cell RNA seq experiments☆109Updated 3 weeks ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆73Updated 4 months ago
- R package for pathway analysis in scRNA-seq data☆74Updated 9 months ago
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆57Updated last year
- Efficient and precise single-cell reference atlas mapping with Symphony☆106Updated 2 years ago
- A tool for semi-automatic cell type harmonization and integration☆106Updated 2 months ago
- Single-cell disease relevance score (scDRS)☆132Updated 7 months ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆104Updated last month
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆74Updated 6 months ago
- ☆76Updated this week
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆61Updated last year
- Spatial transcriptomics of heart tissue☆85Updated last year
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆128Updated 3 months ago
- Single-Cell Clustering Assessment Framework☆101Updated last year
- R implementation of GeneTrajectory☆58Updated last year
- Single Cell Cluster Evaluation☆94Updated 3 years ago
- Significance analysis for clustering single-cell RNA-sequencing data☆116Updated 8 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆74Updated 2 months ago
- A docker image for single-cell analysis☆88Updated 3 months ago
- Single-cell Lung Cancer Atlas with 1.2M cells☆63Updated 4 months ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆111Updated last month
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆60Updated 11 months ago
- Metacells - Single-cell RNA Sequencing Analysis☆107Updated 8 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆68Updated 3 months ago
- R package for semi-supervised single-cell data integration☆82Updated 2 weeks ago
- Analysis of cell-cell communication at single-cell resolution☆101Updated 8 months ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆74Updated last month
- Methods to compute Local Inverse Simpson's Index (LISI)☆61Updated 3 years ago