ShobiStassen / VIALinks
trajectory inference
☆105Updated 11 months ago
Alternatives and similar repositories for VIA
Users that are interested in VIA are comparing it to the libraries listed below
Sorting:
- Direct estimation of mean and covariance from single cell RNA seq experiments☆126Updated 8 months ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆80Updated 11 months ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆78Updated 3 weeks ago
- A tool for semi-automatic cell type harmonization and integration☆117Updated 2 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆83Updated 9 months ago
- Single-cell Lung Cancer Atlas with 1.2M cells☆85Updated 11 months ago
- Single-Cell Clustering Assessment Framework☆107Updated 2 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆69Updated 2 months ago
- R implementation of GeneTrajectory☆69Updated last year
- Context specific and dynamic gene regulatory network reconstruction and analysis☆126Updated last month
- ☆87Updated this week
- Metacells - Single-cell RNA Sequencing Analysis☆116Updated last year
- Analysis of cell-cell communication at single-cell resolution☆105Updated last year
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆88Updated last week
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆137Updated 10 months ago
- ☆127Updated 3 years ago
- A docker image for single-cell analysis☆103Updated 2 months ago
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆119Updated 2 months ago
- AUCell: score single cells with gene regulatory networks☆180Updated last year
- Predict RNA velocity through deep learning☆71Updated 2 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆67Updated 6 months ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆114Updated 8 months ago
- ☆60Updated last week
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆141Updated 2 years ago
- Spatial transcriptomics of heart tissue☆106Updated 2 years ago
- This repository contains all code used for the Human Lung Cell Atlas project.☆58Updated 2 years ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆72Updated 4 years ago
- Significance analysis for clustering single-cell RNA-sequencing data☆124Updated last year
- R package for Pathway RespOnsive GENe activity inference☆113Updated 2 years ago
- Python implementation of Milo for differential abundance testing on KNN graph☆79Updated 10 months ago