trajectory inference
☆109Jan 27, 2025Updated last year
Alternatives and similar repositories for VIA
Users that are interested in VIA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CellRank: dynamics from multi-view single-cell data☆456Updated this week
- ☆19May 30, 2022Updated 4 years ago
- Python implementation of Gene Trajectory☆29Sep 4, 2024Updated last year
- ☆51Feb 7, 2024Updated 2 years ago
- ☆46May 4, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference☆28Nov 12, 2024Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆90Jul 28, 2026Updated last month
- This is the alpha version of the CellOracle package☆488Apr 30, 2026Updated 4 months ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆266Jul 8, 2026Updated last month
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆71Jul 9, 2026Updated last month
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆31Oct 24, 2024Updated last year
- Single cell trajectory detection☆333Jul 15, 2026Updated last month
- Python implementation of the Slingshot pseudotime algorithm☆77Oct 28, 2025Updated 10 months ago
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆633Jun 26, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Metric learning-based graph-partitioned trajectory inference from single-cell data☆12Apr 28, 2023Updated 3 years ago
- Multi-omic velocity inference☆120Oct 23, 2024Updated last year
- Low-dimensional Projection of Single Cell Velocity☆29Aug 26, 2022Updated 4 years ago
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆57Jun 29, 2026Updated 2 months ago
- Non-parametric density inference for single-cell analysis.☆75Jul 28, 2026Updated last month
- A Bayesian model for compositional single-cell data analysis☆200Jan 13, 2026Updated 7 months ago
- Spatiotemporal modeling of spatial transcriptomics☆343Feb 25, 2026Updated 6 months ago
- Ordering gene-expression and functional events in single-cell experiments☆33Jul 6, 2026Updated last month
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆70Jul 8, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- cell type deconvolution for multi-condition bulk RNA-seq data☆36Feb 28, 2022Updated 4 years ago
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆508Jul 26, 2026Updated last month
- Multi-omic single-cell optimal transport tools☆216Updated this week
- scDIOR: Single cell data IO softwaRe☆156Feb 15, 2022Updated 4 years ago
- A tool for detecting somatic variants in single cell data☆228Sep 15, 2024Updated last year
- LIANA+: an all-in-one framework for cell-cell communication☆314Updated this week
- ☆25Aug 15, 2023Updated 3 years ago
- Gene group activity utility functions for Scanpy☆117Dec 21, 2024Updated last year
- A deep learning architecture for robust inference and accurate prediction of cellular dynamics☆88Jul 20, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Predict RNA velocity through deep learning☆72Dec 12, 2023Updated 2 years ago
- Code, data and analysis for moslin.☆15Oct 7, 2024Updated last year
- Some tools for plotting single-cell data☆178May 17, 2025Updated last year
- Context specific and dynamic gene regulatory network reconstruction and analysis☆130Aug 3, 2026Updated 3 weeks ago
- An overview of algorithms for estimating pseudotime in single-cell RNA-seq data☆444Aug 12, 2026Updated 3 weeks ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆262Jan 16, 2026Updated 7 months ago
- ☆40Jun 24, 2025Updated last year