Teddy-XiongGZ / DeepGSEA

Related projects ⓘ

Alternatives and complementary repositories for DeepGSEA

• data2intelligence / CytoSig_prediction
  Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts
  ☆12Updated last year
• wenweixiong / MARVEL
  ☆40Updated 3 months ago
• marrlab / CAR_T_TargetIdentification
  Computational identification of targets for CAR-T cell therapy in AML
  ☆14Updated last year
• yizhak-lab-ccg / RNA_MUTECt_WMN
  ☆22Updated 2 years ago
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆22Updated 2 years ago
• guokai8 / rcellmarker
  Identify cell type based on cell markers for single cell squencing
  ☆10Updated 4 months ago
• PoolLab / ReferenceEnhancer
  ☆20Updated last year
• Vivianstats / scINSIGHT
  Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
  ☆20Updated 7 months ago
• MarioniLab / hbca
  Code used to process the data of the HBCA project
  ☆21Updated 9 months ago
• CyrilLagger / scDiffCom
  Difference in Intercellular Communication from scRNA-seq data
  ☆21Updated 10 months ago
• JinmiaoChenLab / ezSingleCell2
  ☆37Updated 10 months ago
• dzhakparov / GeneSelectR
  ☆19Updated 5 months ago
• LaughneyLab / ContactTracing_tutorial
  ☆13Updated last month
• GreenleafLab / ChrAccR
  Analyzing chromatin accessibility data in R
  ☆18Updated last year
• ImXman / MACA
  MACA: Marker-based automatic cell-type annotation for single cell expression data
  ☆25Updated last year
• ETH-NEXUS / scAmpi_single_cell_RNA
  Code related to scRNA analysis using the scAmpi workflow
  ☆24Updated this week
• TransBioInfoLab / TNBC_analysis
  Code to reproduce TNBC analysis and figures
  ☆23Updated 2 years ago
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆44Updated 3 weeks ago
• Teichlab / celltypist_wiki
  Materials and scripts for building cell type encyclopedia table
  ☆15Updated 2 months ago
• kjgaulton / pipelines
  Analytical tools and pipelines for bulk and single cell epigenomic and human genetic data
  ☆25Updated 3 years ago
• BradBalderson / Cytocipher
  Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…
  ☆30Updated last year
• lusystemsbio / NetAct
  Network construction Algorithm
  ☆18Updated 2 months ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆38Updated 8 months ago
• SunXQlab / scMLnet
  Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks
  ☆25Updated 3 years ago
• songlab-cal / scquint
  ☆15Updated 5 months ago
• veltenlab / mitoClone
  ☆12Updated 3 years ago
• liulab-dfci / TRUST4_manuscript_evaluation
  TRUST4 manuscript evaluation
  ☆14Updated 2 years ago
• quadbio / RNAseq_tutorial
  ☆15Updated 3 weeks ago
• KPMP / Cell-State-Atlas-2022
  Code for a multimodal atlas of healthy and injured cell states and niches in the human kidney
  ☆14Updated 8 months ago
• CICAMS-Liu-lab / ECGEA
  ☆17Updated 3 years ago