Alternatives and similar repositories for DeepGSEA

Users that are interested in DeepGSEA are comparing it to the libraries listed below

• satijalab / Mixscale
  ☆23Updated 3 months ago
• CostaLab / MOJITOO
  MOJITOO: a fast and universal method for integration of multimodal single cell data
  ☆11Updated last year
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆31Updated 10 months ago
• data2intelligence / CytoSig_prediction
  Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts
  ☆14Updated 2 years ago
• JunyueCaoLab / EasySci
  Computational pipeline to process EasySci-RNA data.
  ☆22Updated 2 years ago
• McGranahanLab / ImmuneLENS
  ☆15Updated 11 months ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆45Updated 4 months ago
• CyrilLagger / scDiffCom
  Difference in Intercellular Communication from scRNA-seq data
  ☆24Updated 3 months ago
• Vivianstats / scINSIGHT
  Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
  ☆22Updated last year
• LaughneyLab / ContactTracing_tutorial
  ☆17Updated last year
• ImXman / MACA
  MACA: Marker-based automatic cell-type annotation for single cell expression data
  ☆25Updated 2 years ago
• klarman-cell-observatory / HTAPP-Pipelines
  A record of the analysis pipelines used to create the HTAPP data
  ☆34Updated 9 months ago
• xyang2uchicago / BioTIP
  BioTIP: Biological Tipping-Point Identification and Characterization
  ☆23Updated 3 months ago
• lueckenlab / single-cell-papers-trends
  Trends in single cell papers
  ☆16Updated last year
• limin321 / stmut
  Visualizing Somatic Alterations of 10X Spatial Transcriptomics Data
  ☆14Updated last year
• soumelis-lab / ICELLNET
  ☆22Updated 6 months ago
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆41Updated last year
• yizhak-lab-ccg / RNA_MUTECt_WMN
  ☆25Updated 3 years ago
• AllenInstitute / scrattch.bigcat
  iterative clustering pipeline of big single cell datasets.
  ☆36Updated 4 months ago
• xushiabbvie / TDtool
  ☆13Updated 3 weeks ago
• veltenlab / mitoClone
  ☆12Updated 4 years ago
• FertigLab / pycogaps
  python API to the CoGAPS NMF package
  ☆19Updated 8 months ago
• chriscainx / gastric-cancer
  ☆16Updated 2 years ago
• CICAMS-Liu-lab / ECGEA
  ☆17Updated 4 years ago
• dbrg77 / ISSAAC-seq
  ☆18Updated 2 years ago
• secrierlab / EMT
  This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.
  ☆13Updated 3 years ago
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆30Updated 3 years ago
• MarioniLab / hbca
  Code used to process the data of the HBCA project
  ☆32Updated last year
• JianYang-Lab / MeDuSA
  MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance i…
  ☆43Updated 11 months ago
• ding-lab / ST_subclone_publication
  Code for spatial subclone paper
  ☆16Updated last year