Alternatives and similar repositories for DeepGSEA:

Users that are interested in DeepGSEA are comparing it to the libraries listed below

• data2intelligence / CytoSig_prediction
  Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts
  ☆12Updated last year
• PoolLab / ReferenceEnhancer
  ☆20Updated last year
• LaughneyLab / ContactTracing_tutorial
  ☆17Updated 7 months ago
• JunyueCaoLab / EasySci
  Computational pipeline to process EasySci-RNA data.
  ☆18Updated last year
• CICAMS-Liu-lab / ECGEA
  ☆16Updated 4 years ago
• Fraternalilab / sciCSR
  Single-Cell Inference of Class Switch Recombination
  ☆19Updated last month
• McGranahanLab / ImmuneLENS
  ☆13Updated last month
• MarioniLab / hbca
  Code used to process the data of the HBCA project
  ☆27Updated last year
• dbrg77 / ISSAAC-seq
  ☆17Updated 2 years ago
• qingnanl / gsdensity
  ☆9Updated 9 months ago
• SunXQlab / scMLnet
  Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks
  ☆26Updated 3 years ago
• UPSUTER / GEMLI
  ☆30Updated 3 months ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆41Updated last year
• secrierlab / EMT
  This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.
  ☆12Updated 2 years ago
• csglab / GEDI
  Gene Expression Decomposition and Integration
  ☆18Updated 2 months ago
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆24Updated 3 years ago
• wenweixiong / MARVEL
  ☆49Updated 8 months ago
• FertigLab / pycogaps
  python API to the CoGAPS NMF package
  ☆19Updated last year
• UMCUGenetics / primary-met-wgs-comparison
  Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.
  ☆15Updated last year
• omicsCore / scTyper
  scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data
  ☆29Updated 2 years ago
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆40Updated 3 months ago
• xyang2uchicago / BioTIP
  BioTIP: Biological Tipping-Point Identification and Characterization
  ☆18Updated 4 months ago
• ImXman / MACA
  MACA: Marker-based automatic cell-type annotation for single cell expression data
  ☆25Updated last year
• lueckenlab / single-cell-papers-trends
  Trends in single cell papers
  ☆13Updated 7 months ago
• guokai8 / rcellmarker
  Identify cell type based on cell markers for single cell squencing
  ☆11Updated 9 months ago
• jiang-junyao / IReNA
  R package IReNA
  ☆26Updated 5 months ago
• CyrilLagger / scDiffCom
  Difference in Intercellular Communication from scRNA-seq data
  ☆21Updated last year
• jcolinge / BulkSignalR
  BulkSignalR
  ☆18Updated last month
• Teichlab / snp2cell
  cell type specific, trait-associated gene regulation
  ☆24Updated 3 weeks ago
• Teichlab / celltypist_wiki
  Materials and scripts for building cell type encyclopedia table
  ☆19Updated 3 months ago