Alternatives and similar repositories for DeepGSEA

Users that are interested in DeepGSEA are comparing it to the libraries listed below

• data2intelligence / CytoSig_prediction
  Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts
  ☆12Updated last year
• qingnanl / gsdensity
  ☆9Updated 10 months ago
• McGranahanLab / ImmuneLENS
  ☆13Updated 2 months ago
• ML4BM-Lab / ELATUS
  ☆11Updated last month
• CICAMS-Liu-lab / ECGEA
  ☆16Updated 4 years ago
• csglab / GEDI
  Gene Expression Decomposition and Integration
  ☆17Updated 2 months ago
• PoolLab / ReferenceEnhancer
  ☆20Updated last year
• xushiabbvie / TDtool
  ☆10Updated 7 months ago
• MarioniLab / hbca
  Code used to process the data of the HBCA project
  ☆27Updated last year
• secrierlab / EMT
  This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.
  ☆12Updated 2 years ago
• LaughneyLab / ContactTracing_tutorial
  ☆17Updated 8 months ago
• olapuentesantana / easier_manuscript
  ☆15Updated 3 years ago
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆25Updated 3 years ago
• yizhak-lab-ccg / RNA_MUTECt_WMN
  ☆23Updated 2 years ago
• marrlab / CAR_T_TargetIdentification
  Computational identification of targets for CAR-T cell therapy in AML
  ☆16Updated 2 years ago
• JinmiaoChenLab / FastIntegration
  FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
  ☆23Updated 6 months ago
• liulab-dfci / TRUST4_manuscript_evaluation
  TRUST4 manuscript evaluation
  ☆14Updated 2 years ago
• JunyueCaoLab / EasySci
  Computational pipeline to process EasySci-RNA data.
  ☆18Updated last year
• Fraternalilab / sciCSR
  Single-Cell Inference of Class Switch Recombination
  ☆19Updated last month
• dzhakparov / GeneSelectR
  ☆19Updated 11 months ago
• FertigLab / pycogaps
  python API to the CoGAPS NMF package
  ☆19Updated last year
• omicsCore / scTyper
  scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data
  ☆29Updated 2 years ago
• Teichlab / cell2tcr
  Inference of TCR motifs
  ☆30Updated 2 weeks ago
• CyrilLagger / scDiffCom
  Difference in Intercellular Communication from scRNA-seq data
  ☆21Updated last year
• loosolab / scanpro
  A modular tool for proportion analysis in single-cell sequencing data
  ☆19Updated 3 months ago
• AndersonHu85 / ccRCC_multiomics
  ☆16Updated last year
• wenweixiong / MARVEL
  ☆49Updated 9 months ago
• crazyhottommy / scCustomize
  Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆16Updated 3 years ago
• ImXman / MACA
  MACA: Marker-based automatic cell-type annotation for single cell expression data
  ☆25Updated last year
• jcolinge / BulkSignalR
  BulkSignalR
  ☆18Updated last month