KlugerLab / GeneTrajectory
R implementation of GeneTrajectory
☆58Updated last year
Alternatives and similar repositories for GeneTrajectory:
Users that are interested in GeneTrajectory are comparing it to the libraries listed below
- Gene group activity utility functions for Scanpy☆74Updated 4 months ago
- Analysis of cell-cell communication at single-cell resolution☆100Updated 7 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆60Updated 10 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆73Updated last month
- A tool for semi-automatic cell type harmonization and integration☆104Updated last month
- Aligning gene expression trajectories of single-cell reference and query systems☆64Updated 6 months ago
- Single cell omics biology annotations☆51Updated 2 weeks ago
- ☆43Updated last year
- ☆50Updated 7 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆52Updated last week
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆68Updated 3 weeks ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆73Updated last week
- ☆50Updated 7 months ago
- ☆63Updated 10 months ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆79Updated last year
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆61Updated last year
- Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics☆46Updated 2 weeks ago
- R package for pathway analysis in scRNA-seq data☆73Updated 8 months ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆72Updated 5 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆40Updated 3 months ago
- ☆40Updated 5 months ago
- Spatial transcriptomics of heart tissue☆84Updated last year
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆39Updated 3 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆102Updated last week
- Create cisTarget databases☆50Updated 3 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆36Updated 4 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆77Updated 8 months ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆71Updated 3 months ago