KlugerLab / GeneTrajectory
R implementation of GeneTrajectory
☆49Updated 7 months ago
Related projects ⓘ
Alternatives and complementary repositories for GeneTrajectory
- Gene group activity utility functions for Scanpy☆56Updated 3 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆34Updated 8 months ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆66Updated this week
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆56Updated last month
- ☆40Updated 6 months ago
- Single cell omics biology annotations☆48Updated 2 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆25Updated last month
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆56Updated 5 months ago
- ☆37Updated 2 months ago
- R package for pathway analysis in scRNA-seq data☆62Updated 3 months ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆40Updated last year
- A tool for semi-automatic cell type harmonization and integration☆94Updated 10 months ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆38Updated last year
- ☆48Updated 4 months ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆37Updated 2 months ago
- Analysis of cell-cell communication at single-cell resolution☆96Updated 2 months ago
- ☆46Updated last month
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆38Updated 3 years ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆77Updated last year
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆59Updated last year
- Accurate and fast cell marker gene identification with COSG☆38Updated last year
- This repository contains all code used for the Human Lung Cell Atlas project.☆44Updated last year
- Collection of scripts for analysis of pan fetal immune atlas☆25Updated 2 years ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆58Updated last week
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆34Updated last year
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆21Updated 6 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆60Updated 6 months ago
- ☆39Updated 3 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆50Updated last month