KlugerLab / GeneTrajectoryLinks
R implementation of GeneTrajectory
☆65Updated last year
Alternatives and similar repositories for GeneTrajectory
Users that are interested in GeneTrajectory are comparing it to the libraries listed below
Sorting:
- Gene group activity utility functions for Scanpy☆90Updated 9 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated last month
- A tool for semi-automatic cell type harmonization and integration☆111Updated 6 months ago
- ☆45Updated last year
- R package for pathway analysis in scRNA-seq data☆75Updated last year
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆79Updated 6 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆65Updated last month
- Accurate and fast cell marker gene identification with COSG☆51Updated 6 months ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆78Updated 5 months ago
- Predict RNA velocity through deep learning☆70Updated last year
- Single-cell Lung Cancer Atlas with 1.2M cells☆68Updated 8 months ago
- Metacells - Single-cell RNA Sequencing Analysis☆111Updated last year
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- ☆59Updated 3 months ago
- Analysis of cell-cell communication at single-cell resolution☆104Updated last year
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆23Updated last year
- ☆57Updated last year
- ☆83Updated this week
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆78Updated 2 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 10 months ago
- ☆125Updated 3 years ago
- R package for Protein activity analysis of single-cell RNAseq.☆83Updated 2 years ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated 2 weeks ago
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆67Updated last year
- This repository contains all code used for the Human Lung Cell Atlas project.☆55Updated 2 years ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- Estimation of Single-Cell Potency with Single Cell Entropy☆42Updated 2 years ago
- ☆39Updated 2 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆109Updated 5 months ago
- Functional Inference of Gene Regulation☆46Updated last year