KlugerLab / GeneTrajectoryLinks
R implementation of GeneTrajectory
☆63Updated last year
Alternatives and similar repositories for GeneTrajectory
Users that are interested in GeneTrajectory are comparing it to the libraries listed below
Sorting:
- ☆45Updated last year
- Gene group activity utility functions for Scanpy☆84Updated 8 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆79Updated 5 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆73Updated 2 weeks ago
- R package for pathway analysis in scRNA-seq data☆75Updated last year
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆76Updated 4 months ago
- A tool for semi-automatic cell type harmonization and integration☆109Updated 5 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆63Updated 3 weeks ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆78Updated 3 weeks ago
- Analysis of cell-cell communication at single-cell resolution☆104Updated 11 months ago
- Predict RNA velocity through deep learning☆70Updated last year
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 8 months ago
- ☆56Updated 2 months ago
- R package for Protein activity analysis of single-cell RNAseq.☆83Updated 2 years ago
- Functional Inference of Gene Regulation☆46Updated last year
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…