yelabucsf / scrna-parameter-estimation
Direct estimation of mean and covariance from single cell RNA seq experiments
☆106Updated 3 months ago
Alternatives and similar repositories for scrna-parameter-estimation:
Users that are interested in scrna-parameter-estimation are comparing it to the libraries listed below
- Significance analysis for clustering single-cell RNA-sequencing data☆115Updated 7 months ago
- Single-cell disease relevance score (scDRS)☆127Updated 6 months ago
- ☆105Updated last month
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆80Updated 2 months ago
- trajectory inference☆97Updated 3 months ago
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆55Updated last year
- A tool for semi-automatic cell type harmonization and integration☆104Updated last month
- ☆73Updated last week
- scDIOR: Single cell data IO softwaRe☆139Updated 3 years ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆104Updated 2 years ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆68Updated 3 weeks ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆110Updated last week
- Analysis of cell-cell communication at single-cell resolution☆100Updated 7 months ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆126Updated 2 months ago
- Tools for single-cell data processing☆124Updated 11 months ago
- Methods to discover gene programs on single-cell data☆114Updated last week
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆84Updated 10 months ago
- wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq☆55Updated last month
- Single Cell Cluster Evaluation☆94Updated 3 years ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆158Updated last month
- R implementation of MULTI-seq sample classification workflow☆62Updated last year
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆144Updated 3 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆73Updated last month
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆106Updated 3 months ago
- Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease☆93Updated 3 years ago
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆119Updated last year
- Detect doublets in single-cell RNA-seq data☆85Updated 5 years ago
- A Bayesian model for compositional single-cell data analysis☆163Updated 2 years ago
- ☆118Updated 3 years ago
- Conversion between scRNA-seq objects☆173Updated 2 weeks ago