Direct estimation of mean and covariance from single cell RNA seq experiments
☆133May 5, 2025Updated last year
Alternatives and similar repositories for scrna-parameter-estimation
Users that are interested in scrna-parameter-estimation are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Aligning gene expression trajectories of single-cell reference and query systems☆88Aug 10, 2025Updated 9 months ago
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Mar 4, 2025Updated last year
- ☆37Feb 20, 2026Updated 3 months ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆33Jan 30, 2026Updated 3 months ago
- R package for generalized binary covariance decomposition.☆16Jul 13, 2025Updated 10 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Significance analysis for clustering single-cell RNA-sequencing data☆126Sep 7, 2024Updated last year
- Methods to discover gene programs on single-cell data☆188Updated this week
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆86Mar 19, 2026Updated 2 months ago
- R package for pathway analysis in scRNA-seq data☆81Aug 17, 2024Updated last year
- CHOIR : Clustering Hierarchy Optimization by Iterative Random forests (www.CHOIRclustering.com)☆91Apr 15, 2026Updated last month
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆53Oct 31, 2024Updated last year
- A tool for semi-automatic cell type harmonization and integration☆120Mar 9, 2026Updated 2 months ago
- ☆41Jun 24, 2025Updated 11 months ago
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆35Jul 24, 2025Updated 10 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆188Mar 27, 2025Updated last year
- Trans-association between HLA and TCR-CDR3☆19Mar 29, 2023Updated 3 years ago
- ☆35Apr 11, 2025Updated last year
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆102Updated this week
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆247Mar 14, 2026Updated 2 months ago
- A permutation-free framework for scalable, robust, and reference-based cell-cell communication analysis in single cell transcriptomics st…☆23May 9, 2026Updated 2 weeks ago
- Convert between AnnData and SingleCellExperiment☆149May 19, 2026Updated last week
- R implementation of GeneTrajectory☆70May 9, 2026Updated 2 weeks ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆295Jun 17, 2025Updated 11 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆195Jan 30, 2026Updated 3 months ago
- Calibrated clustering with artificial variables to avoid over-clustering in single-cell RNA-sequencing☆21Nov 18, 2025Updated 6 months ago
- CellRank: dynamics from multi-view single-cell data☆449May 4, 2026Updated 3 weeks ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆247May 14, 2026Updated last week
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆439Apr 11, 2026Updated last month
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆186Aug 12, 2025Updated 9 months ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆300May 11, 2026Updated 2 weeks ago
- ☆65Apr 22, 2026Updated last month
- Analysis of cell-cell communication at single-cell resolution☆107Sep 10, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcript…☆11Jan 15, 2024Updated 2 years ago
- R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…☆14Oct 17, 2024Updated last year
- R package implementation of Milo for testing for differential abundance in KNN graphs☆433May 11, 2026Updated 2 weeks ago
- A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.☆1,000Updated this week
- Single-Cell Inference of Class Switch Recombination☆22Feb 11, 2026Updated 3 months ago
- Metacells - Single-cell RNA Sequencing Analysis☆125Apr 20, 2026Updated last month
- Reference mapping for single-cell genomics☆404Mar 21, 2026Updated 2 months ago