yelabucsf / scrna-parameter-estimation
Direct estimation of mean and covariance from single cell RNA seq experiments
☆75Updated 5 months ago
Related projects ⓘ
Alternatives and complementary repositories for scrna-parameter-estimation
- Significance analysis for clustering single-cell RNA-sequencing data☆100Updated 2 months ago
- Single-cell disease relevance score (scDRS)☆113Updated last month
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆84Updated 4 months ago
- Analysis of cell-cell communication at single-cell resolution☆96Updated 2 months ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆91Updated 11 months ago
- R implementation of MULTI-seq sample classification workflow☆61Updated 11 months ago
- A tool for semi-automatic cell type harmonization and integration☆94Updated 10 months ago
- ☆58Updated 5 years ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆58Updated last week
- ☆59Updated last year
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆66Updated this week
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆96Updated 2 weeks ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆56Updated 5 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆123Updated this week
- ☆26Updated last year
- Data and analysis scripts for our Embryo Timecourse paper.☆65Updated 4 years ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆58Updated 3 years ago
- Methods to discover gene programs on single-cell data☆84Updated this week
- scDIOR: Single cell data IO softwaRe☆134Updated 2 years ago
- Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease☆85Updated 3 years ago
- wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq☆44Updated last month
- ☆46Updated last month
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆102Updated last year
- ☆108Updated 2 years ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆38Updated 3 years ago
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆47Updated 6 months ago
- ☆95Updated last year
- Efficient and precise single-cell reference atlas mapping with Symphony☆100Updated last year
- BANKSY: spatial clustering☆75Updated 3 months ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆66Updated last year