Direct estimation of mean and covariance from single cell RNA seq experiments
☆134May 5, 2025Updated last year
Alternatives and similar repositories for scrna-parameter-estimation
Users that are interested in scrna-parameter-estimation are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Aligning gene expression trajectories of single-cell reference and query systems☆88Aug 10, 2025Updated 10 months ago
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Mar 4, 2025Updated last year
- ☆37Jun 8, 2026Updated last week
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆33Jan 30, 2026Updated 4 months ago
- R package for generalized binary covariance decomposition.☆16Jul 13, 2025Updated 11 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Significance analysis for clustering single-cell RNA-sequencing data☆126Sep 7, 2024Updated last year
- Methods to discover gene programs on single-cell data☆191Jun 5, 2026Updated last week
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆87Mar 19, 2026Updated 2 months ago
- R package for pathway analysis in scRNA-seq data☆81Aug 17, 2024Updated last year
- CHOIR : Clustering Hierarchy Optimization by Iterative Random forests (www.CHOIRclustering.com)☆92Apr 15, 2026Updated last month
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆53Oct 31, 2024Updated last year
- A tool for semi-automatic cell type harmonization and integration☆120Mar 9, 2026Updated 3 months ago
- ☆40Jun 24, 2025Updated 11 months ago
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆35Jul 24, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆191Mar 27, 2025Updated last year
- Trans-association between HLA and TCR-CDR3☆19Mar 29, 2023Updated 3 years ago
- ☆36Apr 11, 2025Updated last year
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆103May 20, 2026Updated 3 weeks ago
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆249Mar 14, 2026Updated 3 months ago
- A permutation-free framework for scalable, robust, and reference-based cell-cell communication analysis in single cell transcriptomics st…☆23May 23, 2026Updated 3 weeks ago
- Convert between AnnData and SingleCellExperiment☆151Updated this week
- R implementation of GeneTrajectory☆71May 9, 2026Updated last month
- TRAjectory-based Differential Expression analysis for SEQuencing data☆297Jun 17, 2025Updated 11 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆197Jan 30, 2026Updated 4 months ago
- Calibrated clustering with artificial variables to avoid over-clustering in single-cell RNA-sequencing☆21Nov 18, 2025Updated 6 months ago
- CellRank: dynamics from multi-view single-cell data☆454Updated this week
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆256May 14, 2026Updated last month
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆447Apr 11, 2026Updated 2 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆188Aug 12, 2025Updated 10 months ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆302May 11, 2026Updated last month
- ☆67Apr 22, 2026Updated last month
- Analysis of cell-cell communication at single-cell resolution☆107Sep 10, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcript…☆11Jan 15, 2024Updated 2 years ago
- R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…☆14Oct 17, 2024Updated last year
- R package implementation of Milo for testing for differential abundance in KNN graphs☆434May 11, 2026Updated last month
- A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.☆1,026Updated this week
- Metacells - Single-cell RNA Sequencing Analysis☆126Apr 20, 2026Updated last month
- Single-Cell Inference of Class Switch Recombination☆23Feb 11, 2026Updated 4 months ago
- Reference mapping for single-cell genomics☆405Mar 21, 2026Updated 2 months ago