hsmaan / Iniquitate
Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
☆30Updated 2 weeks ago
Alternatives and similar repositories for Iniquitate:
Users that are interested in Iniquitate are comparing it to the libraries listed below
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆26Updated 3 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 4 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated last year
- cell type deconvolution for multi-condition bulk RNA-seq data☆23Updated 3 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆29Updated 8 months ago
- Code for a multimodal atlas of healthy and injured cell states and niches in the human kidney☆16Updated last year
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 3 months ago
- A unified interface to spatial transcriptomics deconvolution tools☆40Updated 2 weeks ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- ☆33Updated 11 months ago
- ☆45Updated 7 months ago
- A modular tool for proportion analysis in single-cell sequencing data☆18Updated last month
- ☆40Updated 3 years ago
- .h5mu files interface for Seurat☆28Updated last year
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 3 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆34Updated 4 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 5 months ago
- ☆30Updated 2 months ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆29Updated 6 months ago
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- ☆36Updated 5 months ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆31Updated 3 weeks ago
- analysis script for GBM single cell RNA seq data☆17Updated 3 years ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆31Updated 9 months ago
- Ordering gene-expression and functional events in single-cell experiments☆21Updated last year
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 2 years ago
- Method for de novo mutation calling from droplet based single cell RNA seq data☆13Updated 3 years ago