Single-cell dubious embedding detector (scDED): a statistical method for detecting dubious non-linear embeddings
☆51May 14, 2025Updated last year
Alternatives and similar repositories for scDEED
Users that are interested in scDEED are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CHOIR : Clustering Hierarchy Optimization by Iterative Random forests (www.CHOIRclustering.com)☆93Apr 15, 2026Updated 3 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆89Aug 10, 2025Updated 11 months ago
- scVI extension for unspliced RNA☆15May 18, 2025Updated last year
- mcRigor: a statistical method to enhance the rigor of metacell partitioning in single-cell data analysis☆17Apr 8, 2026Updated 3 months ago
- Calibrated clustering with artificial variables to avoid over-clustering in single-cell RNA-sequencing☆21Nov 18, 2025Updated 8 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements☆22Oct 8, 2025Updated 9 months ago
- ☆59Mar 23, 2025Updated last year
- Finding gene expression states in scRNA-seq data☆54Mar 22, 2024Updated 2 years ago
- Bayesian mixed-effect model to test differences in cell type proportions from single-cell data, in R☆129Updated this week
- ☆51May 18, 2026Updated 2 months ago
- ☆67Sep 13, 2024Updated last year
- Diagnostic functions to assess the quality of cell type annotations in single-cell RNA sequencing data☆13Jul 7, 2026Updated 2 weeks ago
- ☆68Apr 22, 2026Updated 2 months ago
- Open4Gene, A Hurdle Model-based Method for Peak-to-Gene Linkage Analysis☆17Mar 17, 2026Updated 4 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆26Jun 9, 2026Updated last month
- This repository contains all DeepCLIP Python code☆11May 30, 2024Updated 2 years ago
- ☆35Mar 16, 2026Updated 4 months ago
- single-cell Contamination Detection and Correction☆18Jan 15, 2025Updated last year
- Cell Annotation using Machine Learning-based method for the presence of Unknown cells (CAMLU)☆13May 19, 2025Updated last year
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆39Aug 10, 2023Updated 2 years ago
- Latent Embedding Multivariate Regression☆102Updated this week
- Gene group activity utility functions for Scanpy☆108Dec 21, 2024Updated last year
- ☆12Nov 7, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆87Apr 21, 2025Updated last year
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆125Apr 16, 2025Updated last year
- ☆19May 25, 2026Updated last month
- Ordering gene-expression and functional events in single-cell experiments☆33Jul 6, 2026Updated 2 weeks ago
- Gene Expression Decomposition and Integration☆21Feb 9, 2026Updated 5 months ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆41Nov 10, 2025Updated 8 months ago
- ☆12Jan 8, 2026Updated 6 months ago
- Non-parametric density inference for single-cell analysis.☆75Jun 29, 2026Updated 3 weeks ago
- ☆22Jul 17, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- LARIS enables accurate and efficient ligand and receptor interaction analysis in spatial transcriptomics☆16Feb 26, 2026Updated 4 months ago
- SIDISH: Semi-supervised Iterative Deep Learning for Identifying Single-cell High-risk Populations☆23Jan 23, 2026Updated 5 months ago
- A post-clustering differential expression (DE) method robust to false-positive inflation caused by double dipping☆29Jul 15, 2026Updated last week
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆107Jul 13, 2026Updated last week
- R package for generalized binary covariance decomposition.☆16Jul 13, 2025Updated last year
- ☆109Updated this week
- A tool for semi-automatic cell type harmonization and integration☆120Mar 9, 2026Updated 4 months ago