Single-cell dubious embedding detector (scDED): a statistical method for detecting dubious non-linear embeddings
☆51May 14, 2025Updated last year
Alternatives and similar repositories for scDEED
Users that are interested in scDEED are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Aligning gene expression trajectories of single-cell reference and query systems☆89Aug 10, 2025Updated 10 months ago
- scVI extension for unspliced RNA☆15May 18, 2025Updated last year
- ☆51May 18, 2026Updated last month
- ☆67Sep 13, 2024Updated last year
- ☆59Mar 23, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆35Mar 16, 2026Updated 3 months ago
- ☆12Nov 7, 2022Updated 3 years ago
- Finding gene expression states in scRNA-seq data☆52Mar 22, 2024Updated 2 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆41Nov 10, 2025Updated 7 months ago
- Non-parametric density inference for single-cell analysis.☆75Apr 10, 2026Updated 2 months ago
- ☆21Jul 17, 2024Updated last year
- A modular tool for proportion analysis in single-cell sequencing data☆26Feb 26, 2026Updated 4 months ago
- Gene group activity utility functions for Scanpy☆108Dec 21, 2024Updated last year
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆124Apr 16, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Bayesian mixed-effect model to test differences in cell type proportions from single-cell data, in R☆126Jun 4, 2026Updated 3 weeks ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆53Oct 31, 2024Updated last year
- Porting of Protein Activity and Pathway Inference to single cell and Python.☆14Jun 12, 2026Updated 2 weeks ago
- Out-of-Core Principal Component Analysis☆19Dec 25, 2017Updated 8 years ago
- ☆39Apr 16, 2025Updated last year
- Single-cell Mutual Information-based Network Engineering Ranger☆24Aug 28, 2025Updated 10 months ago
- iterative clustering pipeline of big single cell datasets.☆39Sep 5, 2025Updated 9 months ago
- Latent Embedding Multivariate Regression☆102May 19, 2026Updated last month
- This repository contains all DeepCLIP Python code☆11May 30, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- CHOIR : Clustering Hierarchy Optimization by Iterative Random forests (www.CHOIRclustering.com)☆93Apr 15, 2026Updated 2 months ago
- ☆12Mar 5, 2024Updated 2 years ago
- Implementation for Phenotype prediction from single-cell RNA-seq data using attention-based neural networks (Bioinformatics 2024).☆13Jul 15, 2024Updated last year
- A docker image for single-cell analysis☆108Apr 18, 2026Updated 2 months ago
- Ordering gene-expression and functional events in single-cell experiments☆33May 31, 2026Updated 3 weeks ago
- Single-Cell Inference of Class Switch Recombination☆23Jun 19, 2026Updated last week
- SkewC a novel quality-assessment method to identify poor quality single-cells in scRNA-seq experiments. The method relies on the measure …☆10Aug 2, 2023Updated 2 years ago
- single-cell Contamination Detection and Correction☆18Jan 15, 2025Updated last year
- Multi-modal single cell analysis pipelines☆63Dec 11, 2025Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- This is a simple variational autoencoder (VAE) implemented in torch for R☆11Jan 4, 2022Updated 4 years ago
- ☆35Jun 11, 2026Updated 2 weeks ago
- A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…☆26Jun 7, 2025Updated last year
- Code for the paper "MetaQ: fast, scalable and accurate metacell inference via deep single-cell quantization"☆28Dec 7, 2024Updated last year
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…☆21Nov 17, 2024Updated last year
- Python playground for cell-type-specific biology☆14Jun 7, 2026Updated 3 weeks ago
- Cell clustering and communication network inference for single-cell transcriptomics☆15Sep 18, 2024Updated last year