JSB-UCLA / scDEEDLinks
Single-cell dubious embedding detector (scDED): a statistical method for detecting dubious non-linear embeddings
☆45Updated 7 months ago
Alternatives and similar repositories for scDEED
Users that are interested in scDEED are comparing it to the libraries listed below
Sorting:
- ☆35Updated 10 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- ☆32Updated 11 months ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆38Updated 2 years ago
- ☆23Updated 3 months ago
- An R/Bioconductor package to identify higher-order molecular phenotypes☆19Updated last year
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 11 months ago
- ☆20Updated 2 years ago
- ☆44Updated last year
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated 4 months ago
- A single cell sequencing read simulator.☆33Updated last year
- Fast motif matching in R☆46Updated last year
- Epimap processing and analysis code repository☆33Updated 3 years ago
- Inference of TCR motifs☆32Updated 6 months ago
- ☆25Updated 2 months ago
- ☆53Updated last year
- Easy and comprehensive biological network reconstruction and analysis☆34Updated 3 months ago
- ☆48Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆93Updated 7 months ago
- ☆20Updated last month
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 4 years ago
- scWGCNA☆61Updated 3 years ago
- ADTnorm normalizes the cell surface protein measurement of CITE-seq data, facilitating across batches and across studies data integration…☆25Updated 6 months ago
- CHOIR : Clustering Hierarchy Optimization by Iterative Random forests (www.CHOIRclustering.com)☆85Updated 8 months ago
- Inferring gene co-expression networks from single cell gene expression data☆28Updated 3 years ago
- Python package with CLI for the analysis of single cell methylation data.☆18Updated last year
- binned motif enrichment analysis and visualisation☆43Updated 2 months ago
- An end-to-end computational pipeline for large Perturb-seq screens☆15Updated 8 months ago
- BLADE: Bayesian Log-normAl DEconvolution for enhanced in silico microdissection of bulk gene expression data☆29Updated last year