LouisFaure / scFates

Related projects ⓘ

Alternatives and complementary repositories for scFates

• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆25Updated this week
• YosefLab / mrvi_archive
  Multi-resolution Variational Inference
  ☆22Updated last month
• theislab / interactive_plotting
  ☆21Updated 4 years ago
• BayraktarLab / cell2fate
  Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.
  ☆36Updated 2 months ago
• pachterlab / concordex
  Identification of spatial homogeneous regions
  ☆19Updated last month
• wanglab-broad / CAST
  CAST package
  ☆25Updated 3 weeks ago
• immunitastx / monkeybread
  Analyzing cellular niches in spatial transcriptomics data
  ☆27Updated this week
• YosefLab / PopV
  ☆23Updated 2 months ago
• dpeerlab / ENVI
  ☆38Updated last month
• rargelaguet / mouse_organogenesis_10x_multiome_publication
  Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
  ☆40Updated 2 years ago
• GuignardLab / sc3D
  Spatial Single Cell transcriptomic library
  ☆17Updated 8 months ago
• almaan / eggplant
  ☆20Updated 2 years ago
• mbernste / SpatialCorr
  SpatialCorr: Identify gene sets with spatially varying correlation
  ☆12Updated 10 months ago
• doraadong / TraSig
  Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data
  ☆24Updated last year
• raphael-group / STARCH
  Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity
  ☆20Updated 3 months ago
• jfnavarro / st_analysis
  A toolset for analysis and visualisation of Spatial Transcriptomics datasets.
  ☆18Updated 3 years ago
• hms-dbmi / crestree
  Neural Crest Fate Decisions
  ☆10Updated 5 years ago
• brianpenghe / python-genomics
  A set of files to do genomics analysis on python
  ☆18Updated 5 months ago
• jzhoulab / quasildr
  Quasilinear data representations for single-cell omics data analysis
  ☆42Updated last year
• potulabe / symphonypy
  Port of symphony algorithm of single-cell reference atlas mapping to Python
  ☆28Updated 6 months ago
• cantinilab / Circe
  Co-accessibility network from single-cell ATAC-seq data. Python code, based on Cicero package (R).
  ☆18Updated 3 weeks ago
• prabhakarlab / Banksy_py
  ☆34Updated last week
• PMBio / MuDataSeurat
  .h5mu files interface for Seurat
  ☆26Updated 11 months ago
• Moldia / Xenium_benchmarking
  Code used to benchmark Xenium
  ☆40Updated 4 months ago
• theislab / ncem_tutorials
  ☆12Updated 2 years ago
• immunogenomics / cna
  Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…
  ☆45Updated 3 weeks ago
• scverse / ecosystem-packages
  Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)
  ☆19Updated this week
• gerstung-lab / BaSISS
  Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper
  ☆23Updated 2 years ago
• Teichlab / sctk
  ☆22Updated last month
• ratschlab / scim
  Code for Universal Single-Cell Matching with Unpaired Feature Sets
  ☆20Updated 3 years ago