jranek / delve
Feature selection for preserving biological trajectories in single-cell data
☆17Updated 11 months ago
Alternatives and similar repositories for delve:
Users that are interested in delve are comparing it to the libraries listed below
- A gene expression signature scoring Python package.☆13Updated 3 months ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆13Updated 5 months ago
- MOJITOO: a fast and universal method for integration of multimodal single cell data☆10Updated 5 months ago
- ☆19Updated 10 months ago
- MACA: Marker-based automatic cell-type annotation for single cell expression data☆25Updated last year
- ☆22Updated 4 months ago
- ☆9Updated 2 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Updated last year
- ☆12Updated 3 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆25Updated 5 years ago
- ☆15Updated last year
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- Gene Expression Decomposition and Integration☆17Updated last month
- R package for gene selection using k-NN graphs.☆13Updated last year
- cross-species analysis of cell identities, markers and regulations☆12Updated 3 months ago
- scID☆13Updated 3 years ago
- ☆20Updated last year
- CellAnn☆12Updated last year
- Standalone shiny server container for viewing CellChat object☆12Updated 4 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆40Updated last year
- A collection of project templates and useful functions for single-cell data analysis with Scanpy.☆20Updated last year
- Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung☆10Updated last year
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 5 months ago
- Methods for visualization and analysis of spatially-resolved gene expression☆17Updated this week
- Code to reproduce TNBC analysis and figures☆23Updated 2 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 3 weeks ago
- Querying cellular states and programs by learning representations of gene sets☆12Updated 8 months ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆17Updated 3 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- Efficiently compute robust markers across single-cell datasets☆11Updated 3 years ago