☆69Apr 22, 2026Updated 4 months ago
Alternatives and similar repositories for SCARlink
Users that are interested in SCARlink are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆87Apr 21, 2025Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆90Jul 28, 2026Updated last month
- ☆20Updated this week
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Jan 11, 2025Updated last year
- cell type specific, trait-associated gene regulation☆30Aug 5, 2026Updated 3 weeks ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆135Jul 11, 2026Updated last month
- Pipeline to run scE2G☆61Updated this week
- Functional Inference of Gene Regulation☆55Jul 5, 2024Updated 2 years ago
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆40Aug 22, 2024Updated 2 years ago
- scVI extension for unspliced RNA☆15May 18, 2025Updated last year
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆202Jan 30, 2026Updated 7 months ago
- A method for analyzing scATAC-seq experiments.☆33Jun 20, 2025Updated last year
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Apr 20, 2024Updated 2 years ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆196Aug 24, 2026Updated last week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆16Sep 1, 2023Updated 2 years ago
- R and MATLAB scripts for MAGICAL☆12Jun 26, 2024Updated 2 years ago
- Genotype-Neighborhood Associations: A tool for identifying genetic variant associations to the abundance of cell states in single-cell d…☆18Oct 5, 2024Updated last year
- ☆26Aug 8, 2026Updated 3 weeks ago
- ☆12Jun 11, 2023Updated 3 years ago
- ☆43Jan 12, 2026Updated 7 months ago
- Multi-omic velocity inference☆120Oct 23, 2024Updated last year
- scOpen: single-cell open chromatin analysis via NMF modelling☆28Feb 4, 2023Updated 3 years ago
- single-cell Contamination Detection and Correction☆18Jan 15, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- CAST package☆44Oct 26, 2024Updated last year
- identifying disease critical cell types and programs from single cell RNAseq☆61May 30, 2022Updated 4 years ago
- R package IReNA☆31Nov 13, 2024Updated last year
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆262Jan 16, 2026Updated 7 months ago
- Computational pipeline to process EasySci-RNA data.☆23Jan 17, 2024Updated 2 years ago
- ☆35Jul 20, 2026Updated last month
- Pipeline for Universal Mapping of ATAC-seq☆27Sep 23, 2025Updated 11 months ago
- ☆13Jan 23, 2025Updated last year
- Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.☆102Sep 9, 2025Updated 11 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Code for scKINETICS (ISMB 2023)☆22Oct 23, 2023Updated 2 years ago
- Single-cell dubious embedding detector (scDED): a statistical method for detecting dubious non-linear embeddings☆51May 14, 2025Updated last year
- ☆21Jul 7, 2026Updated last month
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆14Oct 21, 2024Updated last year
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆91Mar 19, 2026Updated 5 months ago
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆25Apr 8, 2025Updated last year
- ☆68Sep 13, 2024Updated last year