snehamitra / SCARlinkLinks
☆61Updated 2 weeks ago
Alternatives and similar repositories for SCARlink
Users that are interested in SCARlink are comparing it to the libraries listed below
Sorting:
- Functional Inference of Gene Regulation☆49Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆80Updated 4 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- R implementation of GeneTrajectory☆68Updated last year
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆78Updated this week
- Single cell omics biology annotations☆51Updated 8 months ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated 3 months ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆82Updated 8 months ago
- Gene group activity utility functions for Scanpy☆99Updated last year
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆37Updated last year
- ☆40Updated 6 months ago
- Analysis of cell-cell communication at single-cell resolution☆105Updated last year
- R package for pathway analysis in scRNA-seq data☆76Updated last year
- Predict RNA velocity through deep learning☆71Updated 2 years ago
- Draw phylogenetic trees of tumor evolution☆86Updated 2 years ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆26Updated last year
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆62Updated last year
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 11 months ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆34Updated 11 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆82Updated 9 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆92Updated 6 months ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆43Updated 2 years ago
- ☆46Updated last year
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- Repository to store code used for the analyses presented in "Defining the Regulatory Logic of Breast Cancer Using Single-Cell Epigenetic …☆19Updated 7 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆67Updated last month
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆78Updated 5 months ago
- Accurate and fast cell marker gene identification with COSG☆53Updated this week