snehamitra / SCARlinkLinks
☆56Updated 2 months ago
Alternatives and similar repositories for SCARlink
Users that are interested in SCARlink are comparing it to the libraries listed below
Sorting:
- Aligning gene expression trajectories of single-cell reference and query systems☆73Updated 2 weeks ago
- Functional Inference of Gene Regulation☆46Updated last year
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆22Updated last year
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆31Updated 7 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆73Updated 3 weeks ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 7 months ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆77Updated 4 months ago
- ☆37Updated 2 months ago
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆37Updated last year
- R implementation of GeneTrajectory☆63Updated last year
- Single cell omics biology annotations☆51Updated 4 months ago
- Analysis of cell-cell communication at single-cell resolution☆104Updated 11 months ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 8 months ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year
- Collection of scripts for analysis of pan fetal immune atlas☆27Updated 3 years ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆41Updated last week
- Gene group activity utility functions for Scanpy☆84Updated 8 months ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆42Updated 2 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆56Updated 3 months ago
- Draw phylogenetic trees of tumor evolution☆82Updated 2 years ago
- Repository to store code used for the analyses presented in "Defining the Regulatory Logic of Breast Cancer Using Single-Cell Epigenetic …☆17Updated 3 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 10 months ago
- Functions for single cell data analysis☆32Updated 4 years ago
- R package IReNA☆28Updated 9 months ago
- ☆45Updated last year
- R package for pathway analysis in scRNA-seq data☆75Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆86Updated 2 months ago