snehamitra / SCARlinkLinks
☆54Updated 2 weeks ago
Alternatives and similar repositories for SCARlink
Users that are interested in SCARlink are comparing it to the libraries listed below
Sorting:
- Functional Inference of Gene Regulation☆45Updated last year
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆68Updated 8 months ago
- Single cell omics biology annotations☆51Updated 2 months ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆28Updated 6 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 6 months ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆68Updated this week
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆22Updated last year
- Analysis of cell-cell communication at single-cell resolution☆101Updated 10 months ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- Gene group activity utility functions for Scanpy☆79Updated 6 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆63Updated this week
- ☆36Updated 2 weeks ago
- SCAVENGE is a method to optimize the inference of functional and genetic associations to specific cells at single-cell resolution.☆85Updated last year
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year
- Collection of scripts for analysis of pan fetal immune atlas☆27Updated 2 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 7 months ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated 10 months ago
- Multi-resolution Variational Inference☆22Updated 2 weeks ago
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆32Updated last year
- R package IReNA☆28Updated 8 months ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- inferring regulatory cellular dynamics☆48Updated last week
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆39Updated 2 weeks ago
- R implementation of GeneTrajectory☆59Updated last year
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆54Updated 2 months ago
- Create cisTarget databases☆52Updated 3 weeks ago
- ☆10Updated 2 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 8 months ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆33Updated 3 years ago