digitalcytometry / cytotrace2Links
CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.
☆199Updated last month
Alternatives and similar repositories for cytotrace2
Users that are interested in cytotrace2 are comparing it to the libraries listed below
Sorting:
- Quantifying metabolism activity at the single-cell resolution☆147Updated 5 months ago
- Scissor package☆243Updated last year
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆167Updated 3 months ago
- scDIOR: Single cell data IO softwaRe☆150Updated 3 years ago
- The integration of single cell rank-based gene set enrichment analysis☆140Updated 5 months ago
- reticulate-free single cell format conversion☆198Updated last week
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆168Updated 2 years ago
- Methods to discover gene programs on single-cell data☆163Updated 2 months ago
- ☆178Updated 6 months ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆234Updated 2 years ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆139Updated 3 years ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆136Updated 9 months ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆226Updated last year
- ☆193Updated 3 weeks ago
- This repository contains the code used to generate figures and perform analysis for the manuscript titled "Transcriptomic and Spatial Pro…☆86Updated last year
- A tool for detecting somatic variants in single cell data☆215Updated last year
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆138Updated 2 years ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆239Updated 10 months ago
- ☆110Updated 5 years ago
- ☆257Updated last month
- Significance analysis for clustering single-cell RNA-sequencing data☆119Updated last year
- Data processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".☆121Updated last year
- ☆128Updated last year
- A tool for semi-automatic cell type harmonization and integration☆115Updated last month
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆117Updated last month
- LIANA: a LIgand-receptor ANalysis frAmework☆224Updated last year
- A Bayesian model for compositional single-cell data analysis☆183Updated 2 years ago
- Conversion between scRNA-seq objects☆193Updated last week
- Some tools for plotting single-cell data☆176Updated 6 months ago
- BANKSY: spatial clustering☆130Updated last month