digitalcytometry / cytotrace2Links
CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.
☆206Updated last month
Alternatives and similar repositories for cytotrace2
Users that are interested in cytotrace2 are comparing it to the libraries listed below
Sorting:
- Quantifying metabolism activity at the single-cell resolution☆149Updated 5 months ago
- scDIOR: Single cell data IO softwaRe☆150Updated 3 years ago
- Scissor package☆243Updated last year
- The integration of single cell rank-based gene set enrichment analysis☆140Updated 5 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆175Updated 4 months ago
- reticulate-free single cell format conversion☆199Updated last month
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆169Updated 3 years ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆235Updated 2 years ago
- This repository contains the code used to generate figures and perform analysis for the manuscript titled "Transcriptomic and Spatial Pro…☆87Updated last year
- Methods to discover gene programs on single-cell data☆166Updated 3 months ago
- ☆180Updated 7 months ago
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆138Updated 2 years ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆226Updated last year
- A tool for semi-automatic cell type harmonization and integration☆117Updated last month
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆137Updated 10 months ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆140Updated 4 years ago
- ☆110Updated 5 years ago
- Significance analysis for clustering single-cell RNA-sequencing data☆122Updated last year
- Gene set scoring for single-cell data☆174Updated last month
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆240Updated 11 months ago
- ☆259Updated 2 months ago
- ☆129Updated last year
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆119Updated last month
- A tool for detecting somatic variants in single cell data☆215Updated last year
- An end-to-end Single-Cell Omics analysis Pipeline designed to facilitate comprehensive analysis and exploration of single-cell omics data…☆127Updated this week
- ☆196Updated 2 weeks ago
- Some tools for plotting single-cell data☆176Updated 7 months ago
- This is the repository that contains the analysis of the lung adenocarcinoma single cell dataset☆154Updated 4 years ago
- ☆126Updated 3 years ago
- A Bayesian model for compositional single-cell data analysis☆184Updated 2 years ago