wangyibin / CPhasing
Phasing and scaffolding polyploid genomes based on Pore-C or Hi-C.
☆15Updated this week
Related projects ⓘ
Alternatives and complementary repositories for CPhasing
- ☆28Updated 2 years ago
- ☆20Updated last year
- ☆24Updated 2 years ago
- ☆21Updated 2 months ago
- CATG (Collinearity-based Assembly correcTor GUI) is a tool that can correct genome assembly with collinearity and generate tour files for…☆14Updated 2 months ago
- ☆28Updated 2 months ago
- ☆20Updated 3 months ago
- A genome assembly assessment pipeline.☆36Updated 11 months ago
- ☆26Updated 5 months ago
- ☆29Updated this week
- Plant genome assembly and annotation pipeline using snakemake☆35Updated last year
- Mabs, a genome assembly tool which optimizes parameters of Hifiasm and Flye☆26Updated 6 months ago
- ☆32Updated 8 months ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆21Updated 2 weeks ago
- ☆20Updated 8 months ago
- The tools are used for displaying hic signal of genome☆22Updated 3 years ago
- Inferring natural selection by comparative population genomic analysis across species☆21Updated last year
- use long sequenced reads to close gaps in assemblies☆35Updated 6 years ago
- ☆21Updated 2 years ago
- ☆22Updated last year
- An easy-to-use python package can be used for genomic visual analysis☆17Updated 6 months ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 5 years ago
- Draw a dot plot from a paf alignment☆23Updated 10 months ago
- ☆36Updated last year
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 4 years ago
- This is a method to find telomeres and centromeres in plants.☆37Updated last year
- Centromics: visualing centromeres with multiple omics data☆22Updated this week
- Reconstruction of ancestral genome maps☆16Updated 6 years ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆18Updated 3 months ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆12Updated 3 months ago