Alternatives and similar repositories for CPhasing:

Users that are interested in CPhasing are comparing it to the libraries listed below

• baozg / phased-assembly-check
  ☆29Updated 3 weeks ago
• yilinZhang-bio / Watermelon-pangenome
  ☆20Updated last year
• lardo / khaper
  ☆27Updated 2 years ago
• amsession / Kmer-based-Subgenome-Mapping
  ☆20Updated 5 months ago
• tangerzhang / calc_switchErr
  ☆25Updated 3 years ago
• zy-optimistic / GAEP
  A genome assembly assessment pipeline.
  ☆37Updated last year
• Jianwei-Zhang / DEGAP
  Dynamic Elongation of a Genome Assembly Path
  ☆20Updated 8 months ago
• baozg / assembly-annotation-pipeline
  Plant genome assembly and annotation pipeline using snakemake
  ☆37Updated last year
• moold / paf2dotplot
  Draw a dot plot from a paf alignment
  ☆25Updated last month
• shelkmike / Mabs
  Mabs, a genome assembly tool which optimizes parameters of Hifiasm and Flye
  ☆29Updated last month
• Chenglin20170390 / Haplotype-diversity
  This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…
  ☆23Updated this week
• JiaoLab2021 / SynDiv
  A tool for quick and accurate calculation of syntenic diversity.
  ☆33Updated last week
• simon19891216 / CentIER
  ☆28Updated 5 months ago
• Immortal2333 / Telomeres_and_Centromeres
  This is a method to find telomeres and centromeres in plants.
  ☆37Updated last year
• xjtu-omics / IAGS
  ☆19Updated 2 years ago
• schatzlab / pseudohaploid
  Create a pseudohaploid assembly from a partially resolved diploid assembly
  ☆32Updated 5 years ago
• Kirovez / pyTanFinder
  Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results
  ☆12Updated 5 years ago
• Adamtaranto / TRF2GFF
  Convert Tandem Repeat Finder dat file output into gff3 format
  ☆24Updated last month
• CAFS-bioinformatics / LR_Gapcloser
  use long sequenced reads to close gaps in assemblies
  ☆36Updated 6 years ago
• Argonum-Clever2 / mike
  ☆28Updated 8 months ago
• mrvollger / NucFreq
  ☆35Updated 10 months ago
• yanyew / SynGAP
  ☆31Updated 2 months ago
• ShuaiNIEgithub / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆17Updated last year
• JM-SONG / GenomeSyn
  ☆22Updated 2 years ago
• baozg / Potato_C88
  Chromosome-scale and haplotype-resolved assmebly of tetraploid cultiavetd potato with polyploidy graph binning
  ☆24Updated 5 months ago
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆25Updated 3 years ago
• jkimlab / DESCHRAMBLER
  ☆21Updated 11 months ago
• vgteam / giraffe-sv-paper
  ☆42Updated 8 months ago
• rlorigro / GFAse
  Tool for globally phasing diploid assembly graphs with orthogonal data
  ☆39Updated 2 months ago
• sc-zhang / AlleleFinder
  AlleleFinder is a tool for identifying allele genes from polyploid genome.
  ☆24Updated last month