C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on 3C-based data (Pore-C, CiFi, Hi-C, Omni-C).
☆115Jul 23, 2026Updated 3 months ago
Alternatives and similar repositories for CPhasing
Users that are interested in CPhasing are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A chromosome-level polyploid phasing scaffolding tool☆29Oct 19, 2026Updated 2 weeks ago
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆288Aug 10, 2026Updated 2 months ago
- A haplotype-resolved and telomere-to-telomere genome assembly pipeline (PHap) tailored for autopolyploids, relying solely on common seque…☆31Jul 29, 2025Updated last year
- ☆29May 12, 2026Updated 5 months ago
- A KMER-based genome-wIde Assocation testing approach on polyploids☆72Jul 29, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Telomere compliment tools☆28Nov 17, 2025Updated 11 months ago
- Yet another Hi-C scaffolding tool☆185Nov 4, 2024Updated last year
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆77Jun 4, 2026Updated 4 months ago
- A novel genome assembly pipeline based on deep learning☆71Dec 2, 2024Updated last year
- AlleleFinder is a tool for identifying allele genes from polyploid genome.☆40May 29, 2026Updated 5 months ago
- Dynamic Elongation of a Genome Assembly Path☆32Oct 26, 2026Updated last week
- ☆34Apr 7, 2025Updated last year
- ☆45Dec 11, 2025Updated 10 months ago
- PPL (Pore-C PipLine) is a set of tools to process, evaluate and visualize the multi-way contacts experiment based on 3C and ONT long read…☆16Apr 22, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆16Oct 8, 2026Updated 3 weeks ago
- PhaseGrass, a reference-based phasing workflow generating chromosome-level haplotype-resolved diploid assembly for highly heterozygous ge…☆18Jun 2, 2026Updated 5 months ago
- Tools for Gene Expression Quantification in Polyploid Species☆13Sep 29, 2025Updated last year
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆70May 22, 2021Updated 5 years ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆192Jun 23, 2026Updated 4 months ago
- ☆167Aug 11, 2026Updated 2 months ago
- A filter algorithm with program to filter an alignment or mapping file☆13May 15, 2025Updated last year
- ☆36Jun 24, 2026Updated 4 months ago
- Visualing species tree from ASTRAL with gene tree discordance☆36Aug 21, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆51Jul 23, 2025Updated last year
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- This is the standalone version of the EviAnn pipeline☆187Oct 7, 2026Updated 3 weeks ago
- a gap-filling tools of genome in complex region.☆27Dec 30, 2025Updated 10 months ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆59Oct 9, 2026Updated 3 weeks ago
- ☆21Jul 12, 2026Updated 3 months ago
- Neural network classification of TE☆104Apr 3, 2026Updated 6 months ago
- ☆42May 19, 2025Updated last year
- The tool is employed for the visualisation of genome-wide contact heatmaps.☆14Apr 14, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆176Nov 4, 2025Updated 11 months ago
- A program for assessing the T2T genome continuity and completeness☆98Oct 13, 2026Updated 2 weeks ago
- Draw a dot plot from a paf alignment☆47May 9, 2026Updated 5 months ago
- Centromics: visualing centromeres with multiple omics data☆28Mar 4, 2025Updated last year
- A gap-closing software tool that uses long reads to enhance genome assembly.☆26Apr 25, 2024Updated 2 years ago
- ☆26Oct 22, 2026Updated last week
- Deep Learning Framework for Transposable Element Discovery and Annotation☆12Aug 18, 2026Updated 2 months ago