wangyibin / CPhasing
Phasing and scaffolding polyploid genomes based on Pore-C or Hi-C.
☆16Updated this week
Alternatives and similar repositories for CPhasing:
Users that are interested in CPhasing are comparing it to the libraries listed below
- ☆19Updated last year
- Plant genome assembly and annotation pipeline using snakemake☆35Updated last year
- ☆27Updated 2 years ago
- ☆23Updated 3 months ago
- ☆31Updated last month
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆24Updated 2 years ago
- ☆24Updated 3 years ago
- Mabs, a genome assembly tool which optimizes parameters of Hifiasm and Flye☆27Updated this week
- ☆20Updated 4 months ago
- ☆28Updated 3 months ago
- Draw a dot plot from a paf alignment☆24Updated 11 months ago
- This is a method to find telomeres and centromeres in plants.☆37Updated last year
- use long sequenced reads to close gaps in assemblies☆35Updated 6 years ago
- Integrate multiple genome assemblies into a pangenome graph☆32Updated 2 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- ☆27Updated 7 months ago
- A genome assembly assessment pipeline.☆36Updated last year
- Toolkit for evolutionary analyses of linkage groups☆24Updated 5 months ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆13Updated 4 years ago
- ☆22Updated last year
- ☆34Updated 9 months ago
- Yet another Hi-C scaffolding tool☆19Updated last month
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 6 years ago
- ☆21Updated 3 months ago
- ☆26Updated 11 months ago
- ☆41Updated 7 months ago
- ☆16Updated 10 months ago
- A Hi-C scaffolding method☆22Updated 2 years ago
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆26Updated 3 years ago
- Programs implementing the trio-binning genome assembly method☆19Updated last year