C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on 3C-based data (Pore-C, CiFi, Hi-C, Omni-C).
☆99May 7, 2026Updated last month
Alternatives and similar repositories for CPhasing
Users that are interested in CPhasing are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆271Jan 5, 2026Updated 5 months ago
- ☆16Apr 16, 2026Updated last month
- ☆32Apr 7, 2025Updated last year
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated last year
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69May 22, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- AlleleFinder is a tool for identifying allele genes from polyploid genome.☆38May 29, 2026Updated 2 weeks ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆72Jun 4, 2026Updated last week
- A KMER-based genome-wIde Assocation testing approach on polyploids☆46May 25, 2026Updated 2 weeks ago
- ☆29Jul 16, 2022Updated 3 years ago
- Visualing species tree from ASTRAL with gene tree discordance☆31May 13, 2025Updated last year
- ☆28May 12, 2026Updated last month
- ☆16Apr 3, 2023Updated 3 years ago
- Robust identification of orthologous Synteny with the Orthology Index☆42May 22, 2026Updated 3 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Fast and frugal disk based k-mer counter☆14Apr 1, 2021Updated 5 years ago
- An effective alignment tool for long noisy 3C data (e.g. Pore-C and C-walk)☆16Oct 23, 2024Updated last year
- Generate an interactive dot plot from mummer or minimap alignments☆217Jan 17, 2024Updated 2 years ago
- CATG (Collinearity-based Assembly correcTor GUI) is a tool that can correct genome assembly with collinearity and generate tour files for…☆18Jan 24, 2026Updated 4 months ago
- Chromosome-scale and haplotype-resolved assmebly of tetraploid cultiavetd potato with polyploidy graph binning☆28Aug 14, 2024Updated last year
- several scripts for bioinformatics☆25Nov 27, 2025Updated 6 months ago
- ☆50Nov 24, 2025Updated 6 months ago
- Draw a dot plot from a paf alignment☆42May 9, 2026Updated last month
- ☆191Feb 10, 2026Updated 4 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Ploidy agnostic phasing pipeline and algorithm☆49Jan 3, 2024Updated 2 years ago
- A novel genome assembly pipeline based on deep learning☆70Dec 2, 2024Updated last year
- Yet another Hi-C scaffolding tool☆181Nov 4, 2024Updated last year
- ☆26Mar 23, 2024Updated 2 years ago
- Neural network classification of TE☆100Apr 3, 2026Updated 2 months ago
- ☆24Nov 19, 2025Updated 6 months ago
- Some components that speed up and reduce resource cost for original ALLHiC☆15Jun 21, 2025Updated 11 months ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆52May 2, 2026Updated last month
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆17Sep 17, 2025Updated 8 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Jul 26, 2023Updated 2 years ago
- ☆42May 19, 2025Updated last year
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆13Nov 6, 2025Updated 7 months ago
- Repeat-aware polishing genomes assembled using HiFi long reads☆103Apr 7, 2026Updated 2 months ago
- Dynamic Elongation of a Genome Assembly Path☆25Apr 29, 2026Updated last month
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- An ultra-fast and efficient genomic tool for coverage calculation☆172Feb 9, 2026Updated 4 months ago