wangyibin / CPhasingLinks
C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on Pore-C, HiFi-C/CiFi or Hi-C.
☆85Updated 2 weeks ago
Alternatives and similar repositories for CPhasing
Users that are interested in CPhasing are comparing it to the libraries listed below
Sorting:
- ☆32Updated last year
- use long sequenced reads to close gaps in assemblies☆40Updated 7 years ago
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆44Updated 4 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆68Updated 4 years ago
- AlleleFinder is a tool for identifying allele genes from polyploid genome.☆36Updated last month
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆36Updated 3 years ago
- This is a method to find telomeres and centromeres in plants.☆42Updated 2 years ago
- ☆44Updated 6 months ago
- ☆28Updated 3 years ago
- HiCAT new project☆31Updated 8 months ago
- Plant genome assembly and annotation pipeline using snakemake☆52Updated 8 months ago
- a Semi-automated pipeline for assembling T2T genome☆25Updated 3 months ago
- Draw a dot plot from a paf alignment☆38Updated 4 months ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆55Updated 6 months ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆49Updated 4 months ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆37Updated last year
- Chromosome-scale and haplotype-resolved assmebly of tetraploid cultiavetd potato with polyploidy graph binning☆28Updated last year
- HELIANO is a software for detection and classification of Helitron-like elements.☆32Updated 7 months ago
- Centromics: visualing centromeres with multiple omics data☆25Updated 11 months ago
- ☆41Updated 2 years ago
- A tool for performing collinearity-incorporating homology inference☆33Updated 2 years ago
- A genome assembly assessment pipeline.☆37Updated 2 years ago
- ☆21Updated last year
- A tool for quick and accurate calculation of syntenic diversity.☆42Updated 4 months ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆34Updated 3 months ago
- A KMER-based genome-wIde Assocation testing approach on polyploids☆41Updated last month
- ☆78Updated 5 years ago
- Centromics: visualing centromeres with multiple omics data☆21Updated 2 years ago
- ☆45Updated 3 years ago
- ☆31Updated 10 months ago