Alternatives and similar repositories for SubPhaser

Users that are interested in SubPhaser are comparing it to the libraries listed below

• sc-zhang / AlleleFinder
  AlleleFinder is a tool for identifying allele genes from polyploid genome.
  ☆30Updated 5 months ago
• bichangwei / PMAT
  An efficient assembly tool for plant mitochondrial genome
  ☆62Updated last year
• CAFS-bioinformatics / LR_Gapcloser
  use long sequenced reads to close gaps in assemblies
  ☆37Updated 6 years ago
• moshi4 / CafePlotter
  A tool for plotting CAFE5 gene family expansion/contraction result
  ☆29Updated last year
• Jwindler / AutoHiC
  A novel genome assembly pipeline based on deep learning
  ☆62Updated 6 months ago
• YangJianshun / LINKVIEW2
  DNA序列比对结果 可视化展示工具
  ☆51Updated 2 years ago
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆80Updated 4 years ago
• JiaoLaboratory / CRAQ
  Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement
  ☆62Updated 4 months ago
• phasegenomics / juicebox_scripts
  A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats
  ☆67Updated 4 years ago
• ShiuLab / PseudogenePipeline
  ☆40Updated last year
• hwc2021 / GSAT
  Graph-based Sequence Assembly Toolkit
  ☆19Updated 6 months ago
• alekseyzimin / EviAnn_release
  This is the standalone version of the EviAnn pipeline
  ☆91Updated this week
• fanagislab / GCE
  GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…
  ☆50Updated 5 years ago
• quxiaojian / PGA
  Plastid Genome Annotator
  ☆49Updated 4 years ago
• c-zhou / oatk
  A organelle de novo genome assembly toolkit
  ☆59Updated 3 months ago
• mahulchak / svmu
  A program to call variants from genome alignment
  ☆80Updated last month
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆34Updated 3 years ago
• hewm2008 / VCF2Dis
  VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files
  ☆42Updated 3 weeks ago
• LiaOb21 / colora
  A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitoch…
  ☆20Updated 3 weeks ago
• simonhmartin / tutorials
  Tutorials on evolutionary genomics
  ☆44Updated 3 years ago
• SAMtoBAM / MUMandCo
  MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation
  ☆70Updated 2 months ago
• baozg / assembly-annotation-pipeline
  Plant genome assembly and annotation pipeline using snakemake
  ☆44Updated 3 weeks ago
• oushujun / LTR_FINDER_parallel
  A parallel wrapper for LTR_FINDER
  ☆50Updated 2 months ago
• wjian8 / psvcp_v1.01
  Pan-genome Construction and Population Structure Variation Calling pipeline
  ☆40Updated 8 months ago
• DessimozLab / OMArk
  ☆73Updated 3 months ago
• JiaoLab2021 / varigraph
  An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes
  ☆28Updated 3 months ago
• sinhakrishnendu / babappa
  BAsh-Based Automated Parallel Positive selection Analysis
  ☆15Updated last month
• jamiemcg / BUSCO_phylogenomics
  BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins
  ☆68Updated 8 months ago
• hillerlab / make_lastz_chains
  Portable solution to generate genome alignment chains using lastz
  ☆56Updated last week
• Joseph7e / MAKER-genome-annotations-tutorial
  Construct ab initio gene prediction using only BUSCO augustus models. Add in transcriptome for extra support
  ☆21Updated last year