zhangrengang / SubPhaserLinks
To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.
☆66Updated 5 months ago
Alternatives and similar repositories for SubPhaser
Users that are interested in SubPhaser are comparing it to the libraries listed below
Sorting:
- use long sequenced reads to close gaps in assemblies☆39Updated 7 years ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆68Updated 4 years ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆69Updated last week
- Neural network classification of TE☆95Updated 3 months ago
- ☆79Updated 2 months ago
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆53Updated 5 years ago
- A parallel wrapper for LTR_FINDER☆54Updated 5 months ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆83Updated 4 years ago
- AlleleFinder is a tool for identifying allele genes from polyploid genome.☆31Updated 8 months ago
- ☆40Updated 2 years ago
- a Semi-automated pipeline for assembling T2T genome☆21Updated 2 weeks ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆34Updated 11 months ago
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆39Updated 3 months ago
- This is the standalone version of the EviAnn pipeline☆117Updated 2 weeks ago
- A program to call variants from genome alignment☆81Updated 4 months ago
- A organelle de novo genome assembly toolkit☆69Updated 6 months ago
- DNA序列比对结果 可视化展示工具☆54Updated 2 years ago
- Centromics: visualing centromeres with multiple omics data☆20Updated last year
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆76Updated 2 weeks ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆48Updated 4 months ago
- Genome annotation pipeline☆61Updated last year
- A novel genome assembly pipeline based on deep learning☆65Updated 9 months ago
- An efficient assembly tool for plant mitochondrial genome☆64Updated last year
- Tutorials on evolutionary genomics☆46Updated 3 years ago
- NLR-Annotator upload☆71Updated 2 years ago
- HiCAT new project☆29Updated 4 months ago
- A tool for plotting CAFE5 gene family expansion/contraction result☆32Updated last year
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on Pore-C, HiFi-C/CiFi or Hi-C.☆57Updated 2 months ago
- BAsh-Based Automated Parallel Positive selection Analysis☆15Updated last week
- RepeatIdentifier☆69Updated 6 months ago