zhangrengang / SubPhaser
To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.
☆59Updated last month
Alternatives and similar repositories for SubPhaser:
Users that are interested in SubPhaser are comparing it to the libraries listed below
- ☆40Updated last year
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- A tool for plotting CAFE5 gene family expansion/contraction result☆29Updated last year
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆66Updated 3 years ago
- Plant genome assembly and annotation pipeline using snakemake☆44Updated last year
- scripts used in Rice Pangenome Projects (Evolution).☆10Updated last year
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆59Updated 3 months ago
- A organelle de novo genome assembly toolkit☆59Updated 2 months ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆38Updated 2 weeks ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆33Updated 2 years ago
- DNA序列比对结果 可视化展示工具☆48Updated 2 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆33Updated 2 months ago
- Genome Annotation Pipeline☆35Updated 8 months ago
- A parallel wrapper for LTR_FINDER☆50Updated last month
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆27Updated last month
- Pan-genome Construction and Population Structure Variation Calling pipeline☆38Updated 7 months ago
- This is a method to find telomeres and centromeres in plants.☆40Updated last year
- An efficient assembly tool for plant mitochondrial genome☆62Updated 10 months ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆31Updated 6 months ago
- Graph-based Sequence Assembly Toolkit☆19Updated 5 months ago
- Centromics: visualing centromeres with multiple omics data☆18Updated last year
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆31Updated this week
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆80Updated 3 years ago
- A program to call variants from genome alignment☆80Updated last year
- ☆29Updated 7 months ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 5 months ago
- ☆29Updated 3 months ago
- ☆88Updated 2 months ago
- Tutorials on evolutionary genomics☆43Updated 3 years ago
- A tool for evaluate long-read de novo assembly results☆44Updated 7 months ago