zhangrengang / SubPhaserLinks
To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.
☆70Updated 9 months ago
Alternatives and similar repositories for SubPhaser
Users that are interested in SubPhaser are comparing it to the libraries listed below
Sorting:
- use long sequenced reads to close gaps in assemblies☆39Updated 7 years ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆77Updated last month
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69Updated 4 years ago
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆44Updated 3 months ago
- A parallel wrapper for LTR_FINDER☆55Updated 9 months ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆85Updated 4 years ago
- AlleleFinder is a tool for identifying allele genes from polyploid genome.☆35Updated 3 weeks ago
- a Semi-automated pipeline for assembling T2T genome☆25Updated 3 months ago
- Neural network classification of TE☆97Updated 3 months ago
- A tool for plotting CAFE5 gene family expansion/contraction result☆36Updated 2 years ago
- A program to call variants from genome alignment☆81Updated 8 months ago
- DNA序列比对结果 可视化展示工具☆57Updated 3 years ago
- ☆88Updated last month
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆53Updated 5 years ago
- ☆41Updated 2 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆36Updated 3 years ago
- Genome annotation pipeline☆65Updated last year
- RepeatIdentifier☆71Updated 10 months ago
- Tutorials on evolutionary genomics☆46Updated 3 years ago
- ☆77Updated 6 years ago
- Plastid Genome Annotator☆54Updated 5 years ago
- A novel genome assembly pipeline based on deep learning☆67Updated last year
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆102Updated 2 months ago
- An efficient assembly tool for plant mitochondrial genome☆68Updated last year
- Centromics: visualing centromeres with multiple omics data☆20Updated 2 years ago
- An Example of Subgenome Phasing for Complex Allopolyploidy☆14Updated 2 months ago
- HiCAT new project☆30Updated 8 months ago
- NLR-Annotator upload☆76Updated 2 years ago
- ☆43Updated 5 months ago
- Tutorials on phylogenetic and phylogenomic inference☆49Updated 8 months ago