sc-zhang / T2Tools
T2Tools is a toolset contains several tools for plant T2T assembly, and it is under development.
☆11Updated 6 months ago
Alternatives and similar repositories for T2Tools:
Users that are interested in T2Tools are comparing it to the libraries listed below
- Some components that speed up and reduce resource cost for original ALLHiC☆12Updated last week
- Simple tools for working with Hi-C data☆17Updated 6 years ago
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆10Updated 2 years ago
- SINE annotation tool for plant genomes☆17Updated last year
- ☆16Updated 3 months ago
- Identification of conserved non-coding sequences in plants☆14Updated 2 months ago
- parallelLastz: Running Lastz in parallel☆15Updated 6 months ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆10Updated 11 months ago
- ☆15Updated last year
- A complete telomere-to-telomere assembly of sheep: T2T-sheep1.0☆13Updated 4 months ago
- CATG (Collinearity-based Assembly correcTor GUI) is a tool that can correct genome assembly with collinearity and generate tour files for…☆15Updated last month
- The tools are used for displaying hic signal of genome☆23Updated 4 years ago
- ☆16Updated 3 years ago
- Construct and Analyze the North American Vitis pangenome☆22Updated last year
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆13Updated 11 months ago
- MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…☆12Updated 3 weeks ago
- A viewer for multiple alignment format (MAF) files in JBrowse 2☆12Updated last month
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated last month
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆18Updated this week
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated last year
- A Hi-C scaffolding method☆22Updated 3 years ago
- A tool for motif annotation and visualization in tandem repeats.☆10Updated 6 months ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆21Updated 10 months ago
- Reduce genome assembly redundancy using shared mapped k-mer method.☆13Updated 11 months ago
- Set of script for the paper on the cattle graph genome☆13Updated 2 years ago
- ☆13Updated 9 months ago
- Genome alignment and synteny plots☆29Updated last year
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆11Updated 2 years ago