Some components that speed up and reduce resource cost for original ALLHiC
☆15Jun 21, 2025Updated 11 months ago
Alternatives and similar repositories for ALLHiC_extensions
Users that are interested in ALLHiC_extensions are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CATG (Collinearity-based Assembly correcTor GUI) is a tool that can correct genome assembly with collinearity and generate tour files for…☆18Jan 24, 2026Updated 4 months ago
- several scripts for bioinformatics☆25Nov 27, 2025Updated 5 months ago
- Simple tools for working with Hi-C data☆20Dec 19, 2018Updated 7 years ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated last year
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆17Sep 17, 2025Updated 8 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A plot package for bioinformatics☆29Jan 24, 2026Updated 4 months ago
- ☆16Apr 3, 2023Updated 3 years ago
- ☆29Jul 16, 2022Updated 3 years ago
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆70Mar 23, 2025Updated last year
- ☆13Nov 15, 2017Updated 8 years ago
- A genome assembly assessment pipeline.☆38Nov 20, 2023Updated 2 years ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆28May 7, 2026Updated 2 weeks ago
- ☆32Apr 7, 2025Updated last year
- findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…☆38Jan 16, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- ☆34Mar 19, 2025Updated last year
- ☆45Dec 11, 2025Updated 5 months ago
- AlleleFinder is a tool for identifying allele genes from polyploid genome.☆37Dec 21, 2025Updated 5 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69May 22, 2021Updated 5 years ago
- ☆24Nov 19, 2025Updated 6 months ago
- A pipeline used to identify different modes of duplicated gene pairs☆120Jul 22, 2025Updated 10 months ago
- A Hi-C scaffolding method☆22Dec 22, 2021Updated 4 years ago
- ☆26Mar 23, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆10Jun 13, 2020Updated 5 years ago
- ☆15Feb 22, 2022Updated 4 years ago
- BITACORA: A Bioinformatics tool for gene family annotation☆54Dec 10, 2025Updated 5 months ago
- A viewer for multiple alignment format (MAF) files in JBrowse 2☆14May 14, 2026Updated last week
- Whole Genome Annotation Pipeline☆16Jun 20, 2025Updated 11 months ago
- An ultra-fast gzip file tools☆27Apr 25, 2024Updated 2 years ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆46Mar 13, 2026Updated 2 months ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆30Feb 23, 2026Updated 3 months ago
- Nextflow pipeline for genome annotation of protein-coding genes☆16Dec 21, 2023Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- parallelLastz: Running Lastz in parallel☆18Sep 13, 2024Updated last year
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆113Feb 28, 2026Updated 2 months ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆20Dec 5, 2023Updated 2 years ago
- ☆16Apr 16, 2026Updated last month
- A tool for evaluating long-read de novo assembly results☆53Aug 25, 2024Updated last year
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on 3C-based data (Pore-C, CiFi, Hi-C, Omni-C).☆94May 7, 2026Updated 2 weeks ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Jul 26, 2023Updated 2 years ago