sc-zhang / ALLHiC_extensionsView external linksLinks
Some components that speed up and reduce resource cost for original ALLHiC
☆14Jun 21, 2025Updated 7 months ago
Alternatives and similar repositories for ALLHiC_extensions
Users that are interested in ALLHiC_extensions are comparing it to the libraries listed below
Sorting:
- CATG (Collinearity-based Assembly correcTor GUI) is a tool that can correct genome assembly with collinearity and generate tour files for…☆17Jan 24, 2026Updated 3 weeks ago
- several scripts for bioinformatics☆24Nov 27, 2025Updated 2 months ago
- Simple tools for working with Hi-C data☆18Dec 19, 2018Updated 7 years ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆15Sep 17, 2025Updated 4 months ago
- ☆16Apr 3, 2023Updated 2 years ago
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆70Mar 23, 2025Updated 10 months ago
- A genome assembly assessment pipeline.☆37Nov 20, 2023Updated 2 years ago
- ☆29Jul 16, 2022Updated 3 years ago
- ☆16Nov 19, 2025Updated 2 months ago
- ☆13Nov 15, 2017Updated 8 years ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated 8 months ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆27Sep 20, 2024Updated last year
- ☆31Apr 7, 2025Updated 10 months ago
- A plot package for bioinformatics☆28Jan 24, 2026Updated 2 weeks ago
- ☆26Mar 23, 2024Updated last year
- ☆45Dec 11, 2025Updated 2 months ago
- A Hi-C scaffolding method☆22Dec 22, 2021Updated 4 years ago
- ☆14Feb 22, 2022Updated 3 years ago
- A viewer for multiple alignment format (MAF) files in JBrowse 2☆14Jan 31, 2026Updated last week
- parallelLastz: Running Lastz in parallel☆17Sep 13, 2024Updated last year
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆27Sep 16, 2025Updated 4 months ago
- A pipeline used to identify different modes of duplicated gene pairs☆117Jul 22, 2025Updated 6 months ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆43Jan 14, 2026Updated 3 weeks ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69May 22, 2021Updated 4 years ago
- The IntroBlocker ancestry inference algorithm☆17Oct 24, 2023Updated 2 years ago
- Whole Genome Annotation Pipeline☆16Jun 20, 2025Updated 7 months ago
- A tool for evaluating long-read de novo assembly results☆52Aug 25, 2024Updated last year
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆41Updated this week
- ☆15Jan 19, 2022Updated 4 years ago
- ☆16Dec 25, 2024Updated last year
- BITACORA: A Bioinformatics tool for gene family annotation☆53Dec 10, 2025Updated 2 months ago
- An ultra-fast gzip file tools☆27Apr 25, 2024Updated last year
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Dec 5, 2023Updated 2 years ago
- Nextflow pipeline for genome annotation of protein-coding genes☆16Dec 21, 2023Updated 2 years ago
- ☆20Sep 14, 2022Updated 3 years ago
- Phasing reads with secondary alignments☆21Nov 30, 2024Updated last year
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on Pore-C, HiFi-C/CiFi or Hi-C.☆87Jan 25, 2026Updated 2 weeks ago
- A tool for performing collinearity-incorporating homology inference☆33Oct 7, 2023Updated 2 years ago