Alternatives and similar repositories for ALLHiC_extensions:

Users that are interested in ALLHiC_extensions are comparing it to the libraries listed below

• phasegenomics / matlock
  Simple tools for working with Hi-C data
  ☆17Updated 6 years ago
• sc-zhang / T2Tools
  T2Tools is a toolset contains several tools for plant T2T assembly, and it is under development.
  ☆11Updated 6 months ago
• legumeinfo / pandagma
  Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.
  ☆17Updated 3 weeks ago
• yuanw-18 / Allo4D
  This pipeline is used to distinguish allotetraploid subgenomes.
  ☆10Updated 11 months ago
• yangli557 / AnnoSINE
  SINE annotation tool for plant genomes
  ☆17Updated last year
• HuiyangYu / TGSFilter
  TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming
  ☆21Updated 10 months ago
• Wenfei-Xian / TIPP
  Telomere local assembly, Improved whole genome polish, and Plastid assembly
  ☆17Updated last month
• wangziwei08 / LTR-insertion-time-estimation
  ☆15Updated last year
• sc-zhang / CATG
  CATG (Collinearity-based Assembly correcTor GUI) is a tool that can correct genome assembly with collinearity and generate tour files for…
  ☆15Updated last month
• linguoliang / puzzle-hi-c
  ☆16Updated 2 months ago
• WarrenLab / chicken-pangenome-paper
  Scripts used to perform analyses in Rice et al. (2023)
  ☆15Updated last year
• jnarayan81 / parallelLastz
  parallelLastz: Running Lastz in parallel
  ☆15Updated 6 months ago
• noecochetel / North_American_Vitis_Pangenome
  Construct and Analyze the North American Vitis pangenome
  ☆22Updated last year
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆22Updated 3 years ago
• wtsi-hpag / scaffHiC
  Pipeline for genome scaffolding by modelling distributions of HiC pairs
  ☆10Updated 2 years ago
• esrice / PBJelly
  a fork of the gap-closing pipeline PBJelly
  ☆14Updated 6 years ago
• xiekunwhy / kmerDedup
  Reduce genome assembly redundancy using shared mapped k-mer method.
  ☆13Updated 11 months ago
• YaoZhou89 / WGSc
  ☆16Updated 3 years ago
• simonhmartin / asynt
  Genome alignment and synteny plots
  ☆29Updated last year
• csh3 / RegCloser
  RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…
  ☆13Updated 11 months ago
• magspho / hifieval
  a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).
  ☆21Updated last year
• davidebolo1993 / cosigt
  ☆15Updated last week
• Uauy-Lab / pangenome-haplotypes
  Scripts to do haplotype analysis on pan genomes.
  ☆21Updated 4 years ago
• idanefroni / Conservatory
  Identification of conserved non-coding sequences in plants
  ☆14Updated 2 months ago
• Atvar2 / plotHicGenome
  The tools are used for displaying hic signal of genome
  ☆23Updated 4 years ago
• andreaminio / HaploSync
  Tools for haplotype-wise reconstruction of pseudomolecules
  ☆20Updated 5 months ago
• shingocat / syntenyPlotByR
  plot genome alignment synteny
  ☆21Updated 4 years ago
• evotools / CattleGraphGenomePaper
  Set of script for the paper on the cattle graph genome
  ☆13Updated 2 years ago
• lardo / khaper
  ☆27Updated 2 years ago