sc-zhang / ALLHiC_extensionsLinks
Some components that speed up and reduce resource cost for original ALLHiC
☆14Updated this week
Alternatives and similar repositories for ALLHiC_extensions
Users that are interested in ALLHiC_extensions are comparing it to the libraries listed below
Sorting:
- CATG (Collinearity-based Assembly correcTor GUI) is a tool that can correct genome assembly with collinearity and generate tour files for…☆17Updated 4 months ago
- T2Tools is a toolset contains several tools for plant T2T assembly, and it is under development.☆13Updated last month
- ☆16Updated 2 years ago
- SINE annotation tool for plant genomes☆17Updated last year
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated 3 weeks ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆10Updated last year
- ☆15Updated 3 years ago
- Simple tools for working with Hi-C data☆18Updated 6 years ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆21Updated last year
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆18Updated 2 months ago
- Identification of conserved non-coding sequences in plants☆20Updated last month
- Domain based annotation of transposable elements☆19Updated last month
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year
- Construct and Analyze the North American Vitis pangenome☆23Updated last year
- parallelLastz: Running Lastz in parallel☆16Updated 9 months ago
- Reduce genome assembly redundancy using shared mapped k-mer method.☆15Updated last month
- An ultra-fast and efficient tool for high frequency kmer sequencing reads extraction☆19Updated last year
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 6 years ago
- Inferring natural selection by comparative population genomic analysis across species☆23Updated last year
- A Hi-C scaffolding method☆23Updated 3 years ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆20Updated 8 months ago
- ☆20Updated last week
- Study of TE evolution in a population of genomes☆9Updated last year
- ☆27Updated 2 months ago
- a fork of the gap-closing pipeline PBJelly☆14Updated 6 years ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆14Updated last year
- ☆16Updated 6 months ago
- The tools are used for displaying hic signal of genome☆24Updated 4 years ago
- ☆28Updated 2 years ago