YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.
☆13Nov 6, 2025Updated 6 months ago
Alternatives and similar repositories for yagcloser
Users that are interested in yagcloser are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆38Mar 5, 2023Updated 3 years ago
- ☆12Jun 7, 2024Updated last year
- Software GMATA for SSR mining, marker designing, genotyping, plot etc.☆17Oct 6, 2025Updated 7 months ago
- Nextflow pipeline designed for rapid onsite QC and variant calling of Oxford Nanopore data (following basecalling and demultiplexing with…☆13Aug 9, 2024Updated last year
- ☆42May 19, 2025Updated 11 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆51May 2, 2026Updated last week
- Python-based web scraper for extracting gene summaries from GeneCards.☆11Oct 3, 2024Updated last year
- A genome assembly assessment pipeline.☆38Nov 20, 2023Updated 2 years ago
- Centromere mapping and annotation pipeline☆23May 1, 2026Updated last week
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆37Jun 6, 2022Updated 3 years ago
- K-mer based classifier for Y-contig identification from Whole Genome Assemblies☆13Feb 19, 2020Updated 6 years ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆14Mar 11, 2019Updated 7 years ago
- FastK based version of Merqury☆32Jan 19, 2026Updated 3 months ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆27May 18, 2024Updated last year
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69May 22, 2021Updated 4 years ago
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on 3C-based data (Pore-C, CiFi, Hi-C，Omni-C).☆93Jan 25, 2026Updated 3 months ago
- Gap2Seq is a gap filling and insertion genotyping tool.☆22Aug 12, 2024Updated last year
- Multi-genome synteny block visualization tool☆57Apr 16, 2026Updated 3 weeks ago
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆51Feb 8, 2026Updated 3 months ago
- ☆18Apr 28, 2026Updated last week
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Apr 22, 2024Updated 2 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Downstream Analysis☆20Apr 10, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Apr 12, 2026Updated 3 weeks ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Jul 26, 2023Updated 2 years ago
- Genome Assembly 102☆18Apr 23, 2025Updated last year
- use long sequenced reads to close gaps in assemblies☆40Sep 4, 2018Updated 7 years ago
- ☆26Mar 23, 2024Updated 2 years ago
- ☆30Mar 4, 2022Updated 4 years ago
- A program for assessing the T2T genome continuity and completeness☆95Feb 28, 2026Updated 2 months ago
- Detecting multi-genome synteny using minimizer graph mapping☆105Apr 27, 2026Updated last week
- A Nextflow pipeline for evaluating assembly quality☆40Nov 9, 2025Updated 6 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- R package to draw syntenic plots in 3 different styles☆46Feb 2, 2026Updated 3 months ago
- PhyloSD: Phylogenomic Subgenome Detection pipeline☆11Jun 24, 2022Updated 3 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆33Mar 5, 2021Updated 5 years ago
- Command line tool to plot genomic coverage from a BAM file☆14Apr 5, 2023Updated 3 years ago
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆109Dec 11, 2023Updated 2 years ago
- This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.☆30Apr 2, 2026Updated last month
- Yet another Hi-C scaffolding tool☆180Nov 4, 2024Updated last year