Alternatives and similar repositories for yagcloser

Users that are interested in yagcloser are comparing it to the libraries listed below

• slimsuite / diploidocus
  Diploid genome assembly analysis tools
  ☆14Updated 10 months ago
• NBISweden / TransposonPSI
  TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…
  ☆13Updated 5 years ago
• slimsuite / buscomp
  BUSCOMP: BUSCO Compiler and Comparison tool
  ☆21Updated 10 months ago
• zhangrengang / SOI
  Robust identification of orthologous Synteny with the Orthology Index
  ☆23Updated last week
• Kirovez / pyTanFinder
  Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results
  ☆12Updated 6 years ago
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆27Updated 3 years ago
• kavonrtep / dante
  Domain based annotation of transposable elements
  ☆19Updated 2 months ago
• Adamtaranto / TRF2GFF
  Convert Tandem Repeat Finder dat file output into gff3 format
  ☆27Updated 6 months ago
• simonhmartin / asynt
  Genome alignment and synteny plots
  ☆30Updated 2 years ago
• schmeing / gapless
  Gapless provides combined scaffolding, gap-closing and assembly correction with long reads
  ☆35Updated 2 years ago
• at-cg / RAFT
  ☆25Updated 10 months ago
• SAMtoBAM / PhasedDiploidGenomeAssemblyPipeline
  Using de-novo assembly and read-phasing to assemble reference-free diploid genomes
  ☆22Updated 3 weeks ago
• zy-optimistic / GAEP
  A genome assembly assessment pipeline.
  ☆37Updated last year
• bcgsc / ntSynt-viz
  Multi-genome synteny block visualization tool
  ☆42Updated 5 months ago
• kammoji / gapFinisher
  A reliable gap filling pipeline for draft genomes
  ☆11Updated 5 years ago
• mrvollger / NucFreq
  ☆37Updated last year
• moold / paf2dotplot
  Draw a dot plot from a paf alignment
  ☆30Updated 3 months ago
• isugifNF / polishCLR
  A nextflow pipeline for polishing CLR assemblies
  ☆17Updated 2 years ago
• baozg / phased-assembly-check
  ☆30Updated 6 months ago
• almeidasilvaf / doubletrouble
  An R package to identify and classify duplicated genes from whole-genome protein sequence data
  ☆26Updated 3 months ago
• tangerzhang / calc_switchErr
  ☆27Updated 3 months ago
• wangziwei08 / LTR-insertion-time-estimation
  ☆16Updated 2 years ago
• lardo / khaper
  ☆28Updated 3 years ago
• legumeinfo / pandagma
  Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.
  ☆17Updated 2 weeks ago
• WarrenLab / chicken-pangenome-paper
  Scripts used to perform analyses in Rice et al. (2023)
  ☆15Updated last year
• yanyew / SynGAP
  ☆37Updated 8 months ago
• linguoliang / puzzle-hi-c
  ☆16Updated 6 months ago
• JLSteenwyk / orthosnap
  a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
  ☆26Updated 5 months ago
• i10labtitech / GINGER
  ☆28Updated last year
• kensung-lab / hypo-assembler
  ☆40Updated 2 months ago