Alternatives and similar repositories for yagcloser

Users that are interested in yagcloser are comparing it to the libraries listed below

• i10labtitech / GINGER
  ☆29Updated this week
• almeidasilvaf / doubletrouble
  An R package to identify and classify duplicated genes from whole-genome protein sequence data
  ☆30Updated 3 months ago
• schmeing / gapless
  Gapless provides combined scaffolding, gap-closing and assembly correction with long reads
  ☆38Updated 2 years ago
• zy-optimistic / GAEP
  A genome assembly assessment pipeline.
  ☆37Updated 2 years ago
• kavonrtep / dante
  Domain based annotation of transposable elements
  ☆21Updated 2 months ago
• baozg / phased-assembly-check
  ☆32Updated 11 months ago
• Kirovez / pyTanFinder
  Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results
  ☆13Updated 6 years ago
• NBISweden / TransposonPSI
  TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…
  ☆14Updated 5 years ago
• slimsuite / diploidocus
  Diploid genome assembly analysis tools
  ☆14Updated last year
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆31Updated 3 years ago
• shelkmike / Mabs
  Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye
  ☆33Updated last week
• zhangrengang / SOI
  Robust identification of orthologous Synteny with the Orthology Index
  ☆36Updated 2 months ago
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆22Updated last year
• Adamtaranto / TRF2GFF
  Convert Tandem Repeat Finder dat file output into gff3 format
  ☆29Updated last month
• jkimlab / DESCHRAMBLER
  ☆24Updated last month
• lardo / khaper
  ☆29Updated 3 years ago
• JiaoLab2021 / SynDiv
  A tool for quick and accurate calculation of syntenic diversity.
  ☆42Updated 3 months ago
• linguoliang / puzzle-hi-c
  ☆16Updated last year
• simonhmartin / asynt
  Genome alignment and synteny plots
  ☆33Updated 2 years ago
• tangerzhang / calc_switchErr
  ☆31Updated 8 months ago
• amsession / Kmer-based-Subgenome-Mapping
  ☆21Updated last year
• WarrenLab / chicken-pangenome-paper
  Scripts used to perform analyses in Rice et al. (2023)
  ☆16Updated 2 years ago
• mrvollger / NucFreq
  ☆38Updated 2 months ago
• HuiyangYu / TGSFilter
  TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming
  ☆26Updated last year
• slimsuite / buscomp
  BUSCOMP: BUSCO Compiler and Comparison tool
  ☆21Updated last year
• A-J-F-Mackintosh / syngraph
  Toolkit for evolutionary analyses of linkage groups
  ☆33Updated last year
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆50Updated last month
• moold / paf2dotplot
  Draw a dot plot from a paf alignment
  ☆35Updated 3 months ago
• Jianwei-Zhang / DEGAP
  Dynamic Elongation of a Genome Assembly Path
  ☆23Updated 2 weeks ago
• bcgsc / ntSynt-viz
  Multi-genome synteny block visualization tool
  ☆52Updated 2 months ago