merlyescalona / yagcloserLinks
YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.
☆13Updated 2 years ago
Alternatives and similar repositories for yagcloser
Users that are interested in yagcloser are comparing it to the libraries listed below
Sorting:
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆29Updated 3 years ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 6 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- Multi-genome synteny block visualization tool☆43Updated 7 months ago
- Domain based annotation of transposable elements☆20Updated 3 months ago
- Genome alignment and synteny plots☆31Updated 2 years ago
- A reliable gap filling pipeline for draft genomes☆11Updated 5 years ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆28Updated 8 months ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆37Updated 2 years ago
- Robust identification of orthologous Synteny with the Orthology Index☆29Updated last week
- A nextflow pipeline for polishing CLR assemblies☆17Updated 2 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆41Updated 4 months ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆27Updated 3 weeks ago
- ☆28Updated 3 years ago
- Diploid genome assembly analysis tools☆14Updated 11 months ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated 2 years ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 11 months ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated last week
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- ☆26Updated last year
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆23Updated last year
- ☆30Updated 7 months ago
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- Yet another Hi-C scaffolding tool☆21Updated 10 months ago
- Using de-novo assembly and read-phasing to assemble reference-free diploid genomes☆22Updated 2 months ago
- ☆27Updated 4 months ago
- A tool for quick and accurate calculation of syntenic diversity.☆42Updated 7 months ago
- ☆24Updated last year
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆32Updated 7 months ago
- Dynamic Elongation of a Genome Assembly Path☆22Updated last year