Alternatives and similar repositories for yagcloser:

Users that are interested in yagcloser are comparing it to the libraries listed below

• kavonrtep / dante
  Domain based annotation of transposable elements
  ☆19Updated last week
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆27Updated 3 years ago
• Kirovez / pyTanFinder
  Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results
  ☆12Updated 6 years ago
• HuiyangYu / TGSFilter
  TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming
  ☆21Updated 11 months ago
• slimsuite / diploidocus
  Diploid genome assembly analysis tools
  ☆14Updated 7 months ago
• at-cg / RAFT
  ☆23Updated 8 months ago
• NBISweden / TransposonPSI
  TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…
  ☆13Updated 5 years ago
• slimsuite / buscomp
  BUSCOMP: BUSCO Compiler and Comparison tool
  ☆21Updated 7 months ago
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆19Updated 6 months ago
• simonhmartin / asynt
  Genome alignment and synteny plots
  ☆30Updated last year
• legumeinfo / pandagma
  Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.
  ☆17Updated 3 weeks ago
• xiekunwhy / kmerDedup
  Reduce genome assembly redundancy using shared mapped k-mer method.
  ☆13Updated last week
• WarrenLab / chicken-pangenome-paper
  Scripts used to perform analyses in Rice et al. (2023)
  ☆15Updated last year
• lardo / khaper
  ☆27Updated 2 years ago
• moold / paf2dotplot
  Draw a dot plot from a paf alignment
  ☆27Updated last month
• Wenfei-Xian / TIPP
  Telomere local assembly, Improved whole genome polish, and Plastid assembly
  ☆18Updated last week
• amsession / Kmer-based-Subgenome-Mapping
  ☆20Updated 9 months ago
• zhangrengang / SOI
  Robust identification of orthologous Synteny with the Orthology Index
  ☆18Updated last week
• rpianezza / GenomeDelta
  Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…
  ☆17Updated 5 months ago
• bcgsc / ntSynt-viz
  Multi-genome synteny block visualization tool
  ☆36Updated 3 months ago
• isugifNF / polishCLR
  A nextflow pipeline for polishing CLR assemblies
  ☆17Updated 2 years ago
• tangerzhang / calc_switchErr
  ☆27Updated last month
• wangziwei08 / LTR-insertion-time-estimation
  ☆15Updated 2 years ago
• esolares / HapSolo
  Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding
  ☆20Updated 2 months ago
• wushyer / RGAAT_v2
  Add multiple thread function for genome comparison
  ☆15Updated 3 years ago
• c-zhou / polyGembler
  ☆16Updated 2 years ago
• linguoliang / puzzle-hi-c
  ☆15Updated 4 months ago
• BGI-Qingdao / TGS-GapCloser2
  A gap-closing software tool that uses long reads to enhance genome assembly.
  ☆11Updated last year
• zhangrengang / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆22Updated 2 months ago
• jkimlab / DESCHRAMBLER
  ☆23Updated last year