merlyescalona / yagcloserView external linksLinks
YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.
☆12Nov 6, 2025Updated 3 months ago
Alternatives and similar repositories for yagcloser
Users that are interested in yagcloser are comparing it to the libraries listed below
Sorting:
- Software GMATA for SSR mining, marker designing, genotyping, plot etc.☆17Oct 6, 2025Updated 4 months ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆38Mar 5, 2023Updated 2 years ago
- ☆12Jun 7, 2024Updated last year
- Nextflow pipeline designed for rapid onsite QC and variant calling of Oxford Nanopore data (following basecalling and demultiplexing with…☆13Aug 9, 2024Updated last year
- Gap2Seq is a gap filling and insertion genotyping tool.☆22Aug 12, 2024Updated last year
- K-mer based classifier for Y-contig identification from Whole Genome Assemblies☆13Feb 19, 2020Updated 5 years ago
- FastK based version of Merqury☆32Jan 19, 2026Updated 3 weeks ago
- A genome assembly assessment pipeline.☆37Nov 20, 2023Updated 2 years ago
- ☆41May 19, 2025Updated 8 months ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆13Mar 11, 2019Updated 6 years ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Apr 22, 2024Updated last year
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆50Feb 9, 2026Updated last week
- Centromere mapping and annotation pipeline☆22Feb 10, 2026Updated last week
- GATB Minia assembly pipeline☆31Feb 2, 2023Updated 3 years ago
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on Pore-C, HiFi-C/CiFi or Hi-C.☆87Jan 25, 2026Updated 3 weeks ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Feb 12, 2025Updated last year
- A Nextflow pipeline for evaluating assembly quality☆39Nov 9, 2025Updated 3 months ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Mar 3, 2025Updated 11 months ago
- A program for assessing the T2T genome continuity☆92Dec 14, 2025Updated 2 months ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Jul 26, 2023Updated 2 years ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆26May 18, 2024Updated last year
- kmerfreq count K-mer (with size K) frequency from the input sequence data, typically sequencing reads data, and refe rence genome data is…☆21Mar 30, 2020Updated 5 years ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated last year
- ☆16Jan 14, 2026Updated last month
- Python-based web scraper for extracting gene summaries from GeneCards.☆11Oct 3, 2024Updated last year
- Detecting multi-genome synteny using minimizer graph mapping☆101Feb 9, 2026Updated last week
- R package to draw syntenic plots in 3 different styles☆45Feb 2, 2026Updated 2 weeks ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69May 22, 2021Updated 4 years ago
- ☆26Mar 23, 2024Updated last year
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆36Jun 6, 2022Updated 3 years ago
- Linear-time de novo Long Read Assembler☆41Oct 22, 2025Updated 3 months ago
- Centromics: visualing centromeres with multiple omics data☆25Mar 4, 2025Updated 11 months ago
- ☆10Jun 9, 2025Updated 8 months ago
- ☆11Updated this week
- use long sequenced reads to close gaps in assemblies☆40Sep 4, 2018Updated 7 years ago
- ☆16Nov 19, 2025Updated 2 months ago
- GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology☆27Apr 11, 2025Updated 10 months ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Sep 27, 2019Updated 6 years ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆16Jan 12, 2026Updated last month