merlyescalona / yagcloserLinks
YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.
☆12Updated 2 years ago
Alternatives and similar repositories for yagcloser
Users that are interested in yagcloser are comparing it to the libraries listed below
Sorting:
- Domain based annotation of transposable elements☆19Updated 3 weeks ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆27Updated 3 years ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 6 years ago
- ☆23Updated 9 months ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆13Updated 5 years ago
- Genome alignment and synteny plots☆30Updated 2 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆26Updated 2 months ago
- Yet another Hi-C scaffolding tool☆19Updated 7 months ago
- Diploid genome assembly analysis tools☆14Updated 8 months ago
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆21Updated last year
- ☆27Updated 2 years ago
- plot genome alignment synteny☆21Updated 5 years ago
- Consensus genome annotation using OMA☆24Updated last month
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated this week
- A Hi-C scaffolding method☆23Updated 3 years ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 8 months ago
- ☆27Updated 2 months ago
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆17Updated 6 months ago
- Draw a dot plot from a paf alignment☆29Updated 2 months ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 3 months ago
- Multi-genome synteny block visualization tool☆41Updated 4 months ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago
- A nextflow pipeline for polishing CLR assemblies☆17Updated 2 years ago
- ☆35Updated last year
- Robust identification of orthologous Synteny with the Orthology Index☆19Updated last week
- Reduce genome assembly redundancy using shared mapped k-mer method.☆14Updated last month
- ☆20Updated 10 months ago
- ☆10Updated 2 weeks ago