Draw a dot plot from a paf alignment
☆45May 9, 2026Updated 3 months ago
Alternatives and similar repositories for paf2dotplot
Users that are interested in paf2dotplot are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated last year
- Robust Eukaryotic Annotation Toolkit☆17Feb 28, 2025Updated last year
- ☆28May 12, 2026Updated 3 months ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- Repeat-aware polishing genomes assembled using HiFi long reads☆105Apr 7, 2026Updated 4 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- a gap-filling tools of genome in complex region.☆28Dec 30, 2025Updated 8 months ago
- ☆42Oct 6, 2025Updated 10 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆220Jan 17, 2024Updated 2 years ago
- A KMER-based genome-wIde Assocation testing approach on polyploids☆68Jul 29, 2026Updated last month
- A program for assessing the T2T genome continuity and completeness☆95Feb 28, 2026Updated 6 months ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆16Feb 20, 2023Updated 3 years ago
- ☆78Jun 12, 2020Updated 6 years ago
- This is the standalone version of the EviAnn pipeline☆183Aug 11, 2026Updated 2 weeks ago
- ☆19Jul 12, 2026Updated last month
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on 3C-based data (Pore-C, CiFi, Hi-C, Omni-C).☆109Jul 23, 2026Updated last month
- Improved long-read assembly by preserving contained reads☆29Aug 22, 2024Updated 2 years ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆29May 7, 2026Updated 3 months ago
- ☆42May 19, 2025Updated last year
- Tool for globally phasing diploid assembly graphs with orthogonal data☆43Nov 25, 2024Updated last year
- ☆29Jul 16, 2022Updated 4 years ago
- ☆27Jun 27, 2026Updated 2 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆68May 26, 2026Updated 3 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆36Jan 3, 2022Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Evaluation and polishing workflows for T2T genome assemblies☆167Jun 26, 2026Updated 2 months ago
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆48Sep 22, 2025Updated 11 months ago
- PECAT, a phased error correct and assembly tool☆68Dec 8, 2025Updated 8 months ago
- Evaluating genome assemblies☆125Mar 3, 2026Updated 5 months ago
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆42Feb 15, 2025Updated last year
- A Hi-C scaffolding method☆22Dec 22, 2021Updated 4 years ago
- haplotypic duplication identification tool☆294Oct 30, 2025Updated 10 months ago
- The tools are used for displaying hic signal of genome☆25Jan 4, 2021Updated 5 years ago
- OpenGL Powered Pretext Contact Map Viewer☆63Jul 17, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A organelle de novo genome assembly toolkit☆82Feb 22, 2025Updated last year
- Phased structural variant discovery in pangenomes☆43Jul 27, 2026Updated last month
- ☆13May 27, 2025Updated last year
- An integrative pipeline for family-level super-pangenome analysis across coding and noncoding sequences.☆22Apr 13, 2026Updated 4 months ago
- ☆16Apr 9, 2021Updated 5 years ago
- ☆14Nov 29, 2022Updated 3 years ago
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year