Alternatives and similar repositories for phytop

Users that are interested in phytop are comparing it to the libraries listed below

• zhangrengang / SOI
  Robust identification of orthologous Synteny with the Orthology Index
  ☆37Updated this week
• Argonum-Clever2 / mike
  ☆33Updated 10 months ago
• heche-psb / wgd
  wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication
  ☆37Updated 11 months ago
• rpianezza / GenomeDelta
  Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…
  ☆17Updated last year
• CMB-BNU / PloidyFrost
  reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph
  ☆18Updated 2 years ago
• zy-optimistic / GAEP
  A genome assembly assessment pipeline.
  ☆38Updated 2 years ago
• schmeing / gapless
  Gapless provides combined scaffolding, gap-closing and assembly correction with long reads
  ☆38Updated 2 years ago
• cchauve / ANGeS
  Reconstruction of ancestral genome maps
  ☆16Updated 7 years ago
• harris-2374 / THEx
  Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.
  ☆14Updated last year
• amsession / Kmer-based-Subgenome-Mapping
  ☆21Updated last year
• jkimlab / DESCHRAMBLER
  ☆24Updated 2 months ago
• xiekunwhy / kmerDedup
  Reduce genome assembly redundancy using shared mapped k-mer method.
  ☆15Updated 8 months ago
• Longhui-Ren / Ancestral_Genome_Reconstruction
  Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO
  ☆13Updated 7 years ago
• zhangrengang / subgenome_phasing_example
  An Example of Subgenome Phasing for Complex Allopolyploidy
  ☆14Updated 2 months ago
• kavonrtep / dante
  Domain based annotation of transposable elements
  ☆21Updated 3 months ago
• zhangrengang / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆25Updated 10 months ago
• A-J-F-Mackintosh / syngraph
  Toolkit for evolutionary analyses of linkage groups
  ☆33Updated last year
• simonhmartin / asynt
  Genome alignment and synteny plots
  ☆33Updated 2 years ago
• xtmtd / Phylogenomics
  ☆17Updated last year
• ShiuLab / PseudogenePipeline
  ☆41Updated 2 years ago
• tangerzhang / calc_switchErr
  ☆31Updated 9 months ago
• panlab-bioinfo / TRFill
  a gap-filling tools of genome in complex region.
  ☆24Updated 3 weeks ago
• Jianwei-Zhang / DEGAP
  Dynamic Elongation of a Genome Assembly Path
  ☆25Updated last month
• symgenoevolab / SyntenyFinder
  SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…
  ☆33Updated last year
• Zhenlisme / heliano
  HELIANO is a software for detection and classification of Helitron-like elements.
  ☆32Updated 7 months ago
• bcgsc / ntSynt-viz
  Multi-genome synteny block visualization tool
  ☆52Updated 2 weeks ago
• PuttickMacroevolution / MCMCtreeR
  MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree
  ☆45Updated 6 years ago
• MaoYafei / TREEasy
  A tool to infer species tree and phylogenetic network from multilocus data
  ☆32Updated 5 years ago
• DyogenIBENS / SCORPIOS
  SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.
  ☆23Updated last year
• carolindahms / TreeMix
  Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…
  ☆41Updated last year