zhangrengang / phytopLinks
Visualing species tree from ASTRAL with gene tree discordance
☆24Updated 5 months ago
Alternatives and similar repositories for phytop
Users that are interested in phytop are comparing it to the libraries listed below
Sorting:
- Robust identification of orthologous Synteny with the Orthology Index☆33Updated this week
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated 2 years ago
- ☆32Updated 7 months ago
- An Example of Subgenome Phasing for Complex Allopolyploidy☆13Updated 5 months ago
- A genome assembly assessment pipeline.☆37Updated last year
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆17Updated 11 months ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆38Updated 2 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 8 months ago
- Reconstruction of ancestral genome maps☆16Updated 7 years ago
- Genome alignment and synteny plots☆32Updated 2 years ago
- Domain based annotation of transposable elements☆20Updated 3 weeks ago
- ☆15Updated last year
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆14Updated last year
- Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO☆13Updated 7 years ago
- ☆24Updated last year
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- A tool to infer species tree and phylogenetic network from multilocus data☆32Updated 5 years ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆38Updated last year
- ☆21Updated last year
- Centromics: visualing centromeres with multiple omics data☆24Updated 7 months ago
- Multi-genome synteny block visualization tool☆47Updated last week
- ☆28Updated 3 years ago
- HELIANO is a software for detection and classification of Helitron-like elements.☆31Updated 4 months ago
- SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.☆21Updated last year
- ☆21Updated 2 years ago
- ☆28Updated 6 months ago
- R and Python scripts used to simulate gene trees under coalescent model and detect gene flow using triple frequency☆15Updated 2 years ago
- Dinoflagellate Annotation Workflow☆15Updated 3 years ago
- ☆12Updated 2 years ago