zhangrengang / phytopLinks
Visualing species tree from ASTRAL with gene tree discordance
☆26Updated 6 months ago
Alternatives and similar repositories for phytop
Users that are interested in phytop are comparing it to the libraries listed below
Sorting:
- Robust identification of orthologous Synteny with the Orthology Index☆35Updated last month
- ☆32Updated 8 months ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Updated 2 years ago
- Reconstruction of ancestral genome maps☆16Updated 7 years ago
- An Example of Subgenome Phasing for Complex Allopolyploidy☆13Updated last month
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆17Updated last year
- A genome assembly assessment pipeline.☆37Updated 2 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 9 months ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆38Updated 2 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 6 years ago
- Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO☆13Updated 7 years ago
- ☆21Updated last year
- ☆24Updated 3 weeks ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆14Updated last year
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- Dynamic Elongation of a Genome Assembly Path☆22Updated last year
- a gap-filling tools of genome in complex region.☆21Updated 4 months ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆39Updated last year
- SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.☆22Updated last year
- HELIANO is a software for detection and classification of Helitron-like elements.☆32Updated 6 months ago
- Genome alignment and synteny plots☆33Updated 2 years ago
- ☆22Updated 2 years ago
- Reduce genome assembly redundancy using shared mapped k-mer method.☆15Updated 7 months ago
- Multi-genome synteny block visualization tool☆50Updated last month
- ☆30Updated 8 months ago
- Domain based annotation of transposable elements☆21Updated 2 months ago
- A tool to infer species tree and phylogenetic network from multilocus data☆32Updated 5 years ago
- a Semi-automated pipeline for assembling T2T genome☆24Updated last month
- ContScout sequence contamination filter tool☆26Updated 6 months ago
- ☆16Updated last year