Visualing species tree from ASTRAL with gene tree discordance
☆35Aug 21, 2026Updated last month
Alternatives and similar repositories for phytop
Users that are interested in phytop are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Robust identification of orthologous Synteny with the Orthology Index☆43Aug 22, 2026Updated last month
- R and Python scripts used to simulate gene trees under coalescent model and detect gene flow using triple frequency☆17Dec 15, 2022Updated 3 years ago
- Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)☆260Jun 25, 2026Updated 3 months ago
- ☆27Aug 14, 2026Updated last month
- PhaseGrass, a reference-based phasing workflow generating chromosome-level haplotype-resolved diploid assembly for highly heterozygous ge…☆17Jun 2, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Quantifying Introgression via Branch Lengths☆59Sep 30, 2022Updated 3 years ago
- ML phylogenetic inference for non-model organisms with short reads & assemblies☆15Jun 30, 2026Updated 2 months ago
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on 3C-based data (Pore-C, CiFi, Hi-C, Omni-C).☆111Jul 23, 2026Updated 2 months ago
- ☆45Dec 11, 2025Updated 9 months ago
- A novel genome assembly pipeline based on deep learning☆71Dec 2, 2024Updated last year
- ☆28May 12, 2026Updated 4 months ago
- ☆50Jul 23, 2025Updated last year
- A complete telomere-to-telomere assembly of sheep: T2T-sheep1.0☆21Nov 2, 2024Updated last year
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A tool for quick and accurate calculation of syntenic diversity.☆45Sep 22, 2025Updated last year
- Inferring natural selection by comparative population genomic analysis across species☆28Oct 31, 2023Updated 2 years ago
- ☆43Jun 8, 2023Updated 3 years ago
- A rapid and low-memory multiple-genome aligner for closely related genomes☆25Sep 3, 2025Updated last year
- ☆15Jul 21, 2022Updated 4 years ago
- ☆25Oct 16, 2024Updated last year
- ☆33Apr 7, 2025Updated last year
- ☆16Apr 3, 2023Updated 3 years ago
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆26Nov 21, 2023Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆21Jul 12, 2026Updated 2 months ago
- An Example of Subgenome Phasing for Complex Allopolyploidy☆17Nov 6, 2025Updated 10 months ago
- Neural network classification of TE☆103Apr 3, 2026Updated 5 months ago
- ☆25Updated this week
- ☆23Jan 13, 2026Updated 8 months ago
- ☆49Sep 5, 2023Updated 3 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆32Jul 13, 2026Updated 2 months ago
- Telomere compliment tools☆27Nov 17, 2025Updated 10 months ago
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆25Sep 18, 2026Updated last week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆25Mar 17, 2026Updated 6 months ago
- A statistical framework for ploidy estimation using NGS short-read data☆65Apr 5, 2018Updated 8 years ago
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated 2 years ago
- Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)☆398Feb 13, 2025Updated last year
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆22Jul 26, 2023Updated 3 years ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆184Jun 23, 2026Updated 3 months ago
- Annotate Olfactory receptor CDS from genome☆11Apr 29, 2023Updated 3 years ago