Visualing species tree from ASTRAL with gene tree discordance
☆35Aug 21, 2026Updated last month
Alternatives and similar repositories for phytop
Users that are interested in phytop are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Robust identification of orthologous Synteny with the Orthology Index☆43Aug 22, 2026Updated last month
- R and Python scripts used to simulate gene trees under coalescent model and detect gene flow using triple frequency☆17Dec 15, 2022Updated 3 years ago
- Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)☆260Jun 25, 2026Updated 3 months ago
- ☆28Aug 14, 2026Updated 2 months ago
- Quantifying Introgression via Branch Lengths☆59Sep 30, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ML phylogenetic inference for non-model organisms with short reads & assemblies☆15Oct 5, 2026Updated last week
- PhaseGrass, a reference-based phasing workflow generating chromosome-level haplotype-resolved diploid assembly for highly heterozygous ge…☆17Jun 2, 2026Updated 4 months ago
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on 3C-based data (Pore-C, CiFi, Hi-C, Omni-C).☆115Jul 23, 2026Updated 2 months ago
- ☆45Dec 11, 2025Updated 10 months ago
- ☆29May 12, 2026Updated 5 months ago
- A novel genome assembly pipeline based on deep learning☆71Dec 2, 2024Updated last year
- ☆50Jul 23, 2025Updated last year
- A complete telomere-to-telomere assembly of sheep: T2T-sheep1.0☆21Nov 2, 2024Updated last year
- A tool for quick and accurate calculation of syntenic diversity.☆45Sep 22, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated last year
- Inferring natural selection by comparative population genomic analysis across species☆28Oct 31, 2023Updated 2 years ago
- A rapid and low-memory multiple-genome aligner for closely related genomes☆25Sep 3, 2025Updated last year
- ☆43Jun 8, 2023Updated 3 years ago
- ☆15Jul 21, 2022Updated 4 years ago
- ☆25Oct 16, 2024Updated 2 years ago
- ☆16Apr 3, 2023Updated 3 years ago
- ☆21Jul 12, 2026Updated 3 months ago
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆26Nov 21, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- An Example of Subgenome Phasing for Complex Allopolyploidy☆17Nov 6, 2025Updated 11 months ago
- ☆34Apr 7, 2025Updated last year
- Neural network classification of TE☆104Apr 3, 2026Updated 6 months ago
- ☆25Sep 22, 2026Updated 3 weeks ago
- ☆23Jan 13, 2026Updated 9 months ago
- ☆49Sep 5, 2023Updated 3 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆32Jul 13, 2026Updated 3 months ago
- Telomere compliment tools☆27Nov 17, 2025Updated 11 months ago
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆25Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆25Mar 17, 2026Updated 7 months ago
- A statistical framework for ploidy estimation using NGS short-read data☆67Apr 5, 2018Updated 8 years ago
- Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)☆399Feb 13, 2025Updated last year
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆190Jun 23, 2026Updated 3 months ago
- Annotate Olfactory receptor CDS from genome☆11Apr 29, 2023Updated 3 years ago
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆287Aug 10, 2026Updated 2 months ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆22Jul 26, 2023Updated 3 years ago