Visualing species tree from ASTRAL with gene tree discordance
☆27May 13, 2025Updated 9 months ago
Alternatives and similar repositories for phytop
Users that are interested in phytop are comparing it to the libraries listed below
Sorting:
- Robust identification of orthologous Synteny with the Orthology Index☆40Mar 1, 2026Updated last week
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Jul 26, 2023Updated 2 years ago
- A novel genome assembly pipeline based on deep learning☆69Dec 2, 2024Updated last year
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on 3C-based data (Pore-C, CiFi, Hi-C,Omni-C).☆90Jan 25, 2026Updated last month
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated last year
- ☆29Jul 16, 2022Updated 3 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆29Feb 23, 2026Updated last week
- A statistical framework for ploidy estimation using NGS short-read data☆62Apr 5, 2018Updated 7 years ago
- ☆19Apr 24, 2022Updated 3 years ago
- A tool to infer species tree and phylogenetic network from multilocus data☆32Jul 2, 2020Updated 5 years ago
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆70Mar 23, 2025Updated 11 months ago
- Infering ancestral synteny with hierarchical orthologous groups☆38Oct 17, 2025Updated 4 months ago
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆22Jan 21, 2026Updated last month
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated 10 months ago
- ☆21Aug 8, 2024Updated last year
- ☆26Mar 23, 2024Updated last year
- Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)☆227Jan 4, 2026Updated 2 months ago
- ☆20Oct 16, 2024Updated last year
- Some components that speed up and reduce resource cost for original ALLHiC☆14Jun 21, 2025Updated 8 months ago
- ☆45Dec 11, 2025Updated 2 months ago