Jwindler / AutoHiC
A novel genome assembly pipeline based on deep learning
☆60Updated 2 months ago
Alternatives and similar repositories for AutoHiC:
Users that are interested in AutoHiC are comparing it to the libraries listed below
- Genome annotation pipeline☆56Updated 7 months ago
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆48Updated 4 years ago
- DNA序列比对结果 可视化展示工具☆45Updated 2 years ago
- Neural network classification of TE☆87Updated 2 years ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆78Updated 3 years ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆29Updated last week
- NLR-Annotator upload☆63Updated last year
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆65Updated 3 years ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆58Updated last month
- ☆73Updated 7 months ago
- BITACORA: A Bioinformatics tool for gene family annotation☆43Updated 10 months ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆37Updated 7 months ago
- A parallel wrapper for LTR_FINDER☆49Updated last year
- Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and construc…☆50Updated 8 months ago
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆35Updated last year
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆14Updated 2 weeks ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆86Updated 3 months ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆37Updated 5 months ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆38Updated 3 months ago
- zgtools: A pipeline that allows for the convenient acquisition of T2T (Telomere-to-Telomere) genomes.☆27Updated last month
- Graph-based Sequence Assembly Toolkit☆19Updated 3 months ago
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆43Updated last year
- Genomic related tools☆71Updated 3 years ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆52Updated this week
- TSEBRA: Transcript Selector for BRAKER☆47Updated 3 months ago
- ☆13Updated 4 years ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆36Updated 2 weeks ago
- Useful bioinformatic scripts☆54Updated 2 months ago
- ☆43Updated 8 years ago
- ☆69Updated 2 weeks ago