Alternatives and similar repositories for AutoHiC:

Users that are interested in AutoHiC are comparing it to the libraries listed below

• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆79Updated 3 years ago
• JiaoLaboratory / CRAQ
  Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement
  ☆58Updated 2 months ago
• YangJianshun / LINKVIEW2
  DNA序列比对结果 可视化展示工具
  ☆47Updated 2 years ago
• fanagislab / GCE
  GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…
  ☆49Updated 5 years ago
• meiyang12 / Genome-annotation-pipeline
  Genome annotation pipeline
  ☆58Updated 9 months ago
• DessimozLab / OMArk
  ☆71Updated 3 weeks ago
• steuernb / NLR-Annotator
  NLR-Annotator upload
  ☆64Updated last year
• molevol-ub / bitacora
  BITACORA: A Bioinformatics tool for gene family annotation
  ☆43Updated 11 months ago
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆47Updated 4 months ago
• phasegenomics / juicebox_scripts
  A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats
  ☆65Updated 3 years ago
• SwiftSeal / resistify
  Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…
  ☆30Updated this week
• BGI-shenzhen / RectChr
  Multi-level visualization of genomic statistical variables on rectangular chromosomes
  ☆87Updated 4 months ago
• chenlianfu / geta
  ☆78Updated 8 months ago
• 0xTCG / biser
  A fast tool for detecting and decomposing segmental duplications in genome assemblies
  ☆47Updated last year
• LiLabAtVT / DeepTE
  Neural network classification of TE
  ☆87Updated 2 years ago
• JiaoLab2021 / EVG
  A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads
  ☆37Updated 9 months ago
• daewoooo / SVbyEye
  ☆77Updated last month
• mapleforest / HaploMerger2
  ☆43Updated 8 years ago
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆80Updated last month
• xuzhougeng / Genomic_tools
  Genomic related tools
  ☆70Updated 3 years ago
• yeeus / GCI
  A program for assessing the T2T genome continuity
  ☆69Updated 3 weeks ago
• oushujun / LTR_FINDER_parallel
  A parallel wrapper for LTR_FINDER
  ☆49Updated last week
• yjx1217 / RMRB
  This is an archive version of old RepBase library (v20170127) for RepeatMasker.
  ☆33Updated 3 years ago
• sc-zhang / AlleleFinder
  AlleleFinder is a tool for identifying allele genes from polyploid genome.
  ☆27Updated 3 months ago
• HongboDoll / TomatoSuperPanGenome
  Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and construc…
  ☆50Updated 9 months ago
• vlothec / TRASH
  RepeatIdentifier
  ☆62Updated last week
• CSU-KangHu / HiTE
  High-precision TE Annotator
  ☆105Updated 3 weeks ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆54Updated 2 years ago
• linyuiz / zgtools
  zgtools: A pipeline that allows for the convenient acquisition of T2T (Telomere-to-Telomere) genomes.
  ☆30Updated 2 months ago
• JiaoLab2021 / varigraph
  An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes
  ☆23Updated 3 weeks ago