A novel genome assembly pipeline based on deep learning
☆71Dec 2, 2024Updated last year
Alternatives and similar repositories for AutoHiC
Users that are interested in AutoHiC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An Example of Subgenome Phasing for Complex Allopolyploidy☆17Nov 6, 2025Updated 11 months ago
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆287Aug 10, 2026Updated 2 months ago
- a gap-filling tools of genome in complex region.☆27Dec 30, 2025Updated 9 months ago
- Robust identification of orthologous Synteny with the Orthology Index☆43Aug 22, 2026Updated last month
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆76Jun 4, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Telomere compliment tools☆27Nov 17, 2025Updated 10 months ago
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆174Nov 4, 2025Updated 11 months ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- ☆33Apr 7, 2025Updated last year
- This is the standalone version of the EviAnn pipeline☆187Updated this week
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆188Jun 23, 2026Updated 3 months ago
- Yet another Hi-C scaffolding tool☆183Nov 4, 2024Updated last year
- ☆45Dec 11, 2025Updated 9 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- High-precision TE Annotator☆165Dec 4, 2025Updated 10 months ago
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆202Aug 17, 2026Updated last month
- Visualing species tree from ASTRAL with gene tree discordance☆35Aug 21, 2026Updated last month
- ☆29May 12, 2026Updated 4 months ago
- ☆36Jun 24, 2026Updated 3 months ago
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on 3C-based data (Pore-C, CiFi, Hi-C, Omni-C).☆113Jul 23, 2026Updated 2 months ago
- ☆25Sep 22, 2026Updated 2 weeks ago
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆25Oct 1, 2026Updated last week
- ☆29Jul 16, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A KMER-based genome-wIde Assocation testing approach on polyploids☆71Jul 29, 2026Updated 2 months ago
- A Hi-C scaffolding method☆22Dec 22, 2021Updated 4 years ago
- ☆21Jul 12, 2026Updated 2 months ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆17Sep 17, 2025Updated last year
- Repeat-aware polishing genomes assembled using HiFi long reads☆105Apr 7, 2026Updated 6 months ago
- Dynamic Elongation of a Genome Assembly Path☆29Jul 27, 2026Updated 2 months ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆250Sep 6, 2024Updated 2 years ago
- ☆43Jun 8, 2023Updated 3 years ago
- ☆50Jul 23, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆33Sep 29, 2026Updated last week
- A comprehensive C++ telomere annotation tool for genome assemblies and reads.☆18Oct 2, 2026Updated last week
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆113Nov 17, 2025Updated 10 months ago
- ☆23Aug 8, 2024Updated 2 years ago
- The tools are used for displaying hic signal of genome☆25Jan 4, 2021Updated 5 years ago
- A pipeline used to identify different modes of duplicated gene pairs☆124Jul 22, 2025Updated last year
- Consensus genome annotation using OMA☆32Jan 14, 2026Updated 8 months ago