ryought / hic_hiker
HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C
☆26Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for hic_hiker
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.☆20Updated 2 years ago
- Identification of segmental duplications in the genome☆26Updated 2 years ago
- The tools are used for displaying hic signal of genome☆22Updated 3 years ago
- ☆15Updated 2 years ago
- B73Ab10 genome assembly methods☆16Updated 2 years ago
- A Hi-C scaffolding method☆22Updated 2 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆23Updated 2 years ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago
- ☆16Updated 2 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 6 years ago
- ☆15Updated 3 years ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆21Updated 2 weeks ago
- Programs implementing the trio-binning genome assembly method☆19Updated 11 months ago
- Plant genome assembly and annotation pipeline using snakemake☆35Updated last year
- Dynamic Elongation of a Genome Assembly Path☆15Updated 6 months ago
- ☆22Updated last year
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 4 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 5 years ago
- ☆21Updated 2 months ago
- Construct and Analyze the North American Vitis pangenome☆21Updated 10 months ago
- Nextflow pipeline for scaffolding genome assemblies with Hi-C reads☆13Updated 11 months ago
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆26Updated 3 years ago
- CATG (Collinearity-based Assembly correcTor GUI) is a tool that can correct genome assembly with collinearity and generate tour files for…☆14Updated 2 months ago
- Combine structural variation outputs from long sequencing reads into a superior call set☆13Updated 4 months ago
- SINE annotation tool for plant genomes☆18Updated 9 months ago
- plot genome alignment synteny☆19Updated 4 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆20Updated last month
- Draw a dot plot from a paf alignment☆23Updated 10 months ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆12Updated 4 years ago