☆52Nov 24, 2025Updated 8 months ago
Alternatives and similar repositories for wf-pore-c
Users that are interested in wf-pore-c are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆18Aug 14, 2024Updated last year
- An effective alignment tool for long noisy 3C data (e.g. Pore-C and C-walk)☆16Oct 23, 2024Updated last year
- PPL (Pore-C PipLine) is a set of tools to process, evaluate and visualize the multi-way contacts experiment based on 3C and ONT long read…☆16Apr 22, 2025Updated last year
- ☆22Jan 13, 2026Updated 6 months ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆43Nov 25, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- We developed a protocol of in situ high throughput multi-way contact long read Pore-C sequencing (in situ HiPore-C), a strategy that inte …☆23Mar 17, 2024Updated 2 years ago
- Discovery of communities in Pore-C concatemers☆16Feb 12, 2025Updated last year
- Neural network classification of TE☆100Apr 3, 2026Updated 3 months ago
- Ploidy agnostic phasing pipeline and algorithm☆50Jan 3, 2024Updated 2 years ago
- A program for assessing the T2T genome continuity and completeness☆95Feb 28, 2026Updated 5 months ago
- ☆123Jul 17, 2026Updated last week
- test repository☆29Jul 6, 2023Updated 3 years ago
- A novel genome assembly pipeline based on deep learning☆71Dec 2, 2024Updated last year
- ☆19Jul 12, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆63Aug 28, 2025Updated 11 months ago
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on 3C-based data (Pore-C, CiFi, Hi-C, Omni-C).☆104Updated this week
- A GAN-based method for Enhancing Hi-C data☆33Dec 17, 2020Updated 5 years ago
- De novo assembly from Oxford Nanopore reads.☆89Jun 29, 2026Updated last month
- Yet another Hi-C scaffolding tool☆181Nov 4, 2024Updated last year
- Genome annotation pre-publication results☆36Jun 19, 2026Updated last month
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- Pore-C support☆54Feb 22, 2023Updated 3 years ago
- A Python implementation for BH-FDR and HiCCUPS☆54Dec 29, 2025Updated 7 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆11Dec 7, 2022Updated 3 years ago
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆78Jul 22, 2025Updated last year
- a gap-filling tools of genome in complex region.☆28Dec 30, 2025Updated 6 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69May 22, 2021Updated 5 years ago
- ☆32Mar 3, 2026Updated 4 months ago
- Fast alignment and preprocessing of chromatin profiles☆226Mar 20, 2026Updated 4 months ago
- Code for assembly approach presented in "Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspri…☆15Nov 20, 2023Updated 2 years ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆43Jan 31, 2024Updated 2 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆39Mar 5, 2023Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- The tools are used for displaying hic signal of genome☆26Jan 4, 2021Updated 5 years ago
- A comprehensive telomere annotation tool for genome assemblies and graphs.☆17Updated this week
- ☆26Mar 23, 2024Updated 2 years ago
- Extract 3D contacts (.pairs) from sequencing alignments☆135Feb 3, 2026Updated 5 months ago
- ☆35Jun 24, 2026Updated last month
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Apr 28, 2020Updated 6 years ago
- ☆28May 12, 2026Updated 2 months ago