epi2me-labs / wf-pore-cLinks
☆42Updated 5 months ago
Alternatives and similar repositories for wf-pore-c
Users that are interested in wf-pore-c are comparing it to the libraries listed below
Sorting:
- A program for assessing the T2T genome continuity☆83Updated last month
- Error correction of ONT transcript reads☆58Updated last year
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- ☆77Updated 5 years ago
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- perSVade: personalized Structural Variation detection☆40Updated 3 weeks ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆68Updated last month
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆43Updated 9 months ago
- Set of tools to manipulate and visualize modified base bam files☆56Updated 3 years ago
- ☆31Updated 11 months ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆48Updated 5 months ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆30Updated last week
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆57Updated 7 months ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆49Updated 5 months ago
- Copy number caller for long read data including SNV utilization☆65Updated 4 months ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 7 months ago
- Variant annotation and merging pipeline☆39Updated 2 weeks ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆49Updated 2 weeks ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆28Updated 5 months ago
- A battery of methylation tools for PacBio HiFi reads☆40Updated 3 weeks ago
- test repository☆29Updated 2 years ago
- A local-haplotagging-based small and structural variant caller☆78Updated last week
- Pore-C support☆53Updated 2 years ago
- A gene fusion caller for long-read transcriptome sequencing data.☆19Updated last year
- Structural variant merging tool☆53Updated 11 months ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆101Updated 4 years ago
- Simple library/pipeline to generate and handle Hi-C data.☆38Updated 8 months ago
- Simple pileup-based variant caller☆91Updated 3 months ago
- ☆30Updated 7 months ago
- ☆23Updated last week