Alternatives and similar repositories for wf-pore-c:

Users that are interested in wf-pore-c are comparing it to the libraries listed below

• yeeus / GCI
  A program for assessing the T2T genome continuity
  ☆62Updated last month
• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆58Updated last year
• rrazaghi / modbamtools
  Set of tools to manipulate and visualize modified base bam files
  ☆49Updated 2 years ago
• 0xTCG / biser
  A fast tool for detecting and decomposing segmental duplications in genome assemblies
  ☆45Updated 11 months ago
• WGLab / DeepRepeat
  An accurate repeat detection from Nanopore data using deep learning and image techniques
  ☆22Updated last year
• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆56Updated last month
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 4 years ago
• AnimalGenomicsETH / bovine-graphs
  Integrate multiple genome assemblies into a pangenome graph
  ☆32Updated 2 years ago
• kage-genotyper / kage
  Alignment-free genotyper for SNPs and short indels, implemented in Python.
  ☆48Updated 3 months ago
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆38Updated last month
• tanghaibao / allhic
  Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
  ☆59Updated 2 weeks ago
• PacificBiosciences / HiFiCNV
  Copy number variant caller and depth visualization utility for PacBio HiFi reads
  ☆39Updated 2 months ago
• OliveiraDS-hub / ChimeraTE
  A pipeline to detect chimeric transcripts derived from genes and transposable elements.
  ☆21Updated 6 months ago
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆31Updated last week
• shilpagarg / DipAsm
  ☆76Updated 4 years ago
• cfarkas / annotate_my_genomes
  A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes
  ☆30Updated 9 months ago
• lh3 / dipcall
  Reference-based variant calling pipeline for a pair of phased haplotype assemblies
  ☆97Updated 3 years ago
• nanoporegenomics / napu_wf
  WDL workflows for variant calling and assembly using ONT
  ☆30Updated 3 weeks ago
• farhangus / Sniffles2_plot
  ☆27Updated 5 months ago
• Nextomics / pipeline-for-isoseq
  A pipeline for isoseq
  ☆23Updated 6 years ago
• vahidAK / NanoMethPhase
  Methylation Phasing for Nanopore Sequencing
  ☆45Updated last year
• FAANG / analysis-TAGADA
  GENE-SWitCH project RNA-Seq analysis pipeline
  ☆24Updated 7 months ago
• weng-lab / TEMP2
  Algorithm to detect germline and de novo transposon insertions
  ☆26Updated 9 months ago
• vgteam / giraffe-sv-paper
  ☆42Updated 8 months ago
• a-slide / pycoMeth
  DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets
  ☆34Updated 3 years ago
• PacificBiosciences / jasmine
  Predict 5mC in PacBio HiFi reads
  ☆36Updated this week
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆70Updated last month
• jonassibbesen / rpvg
  Method for inferring path posterior probabilities and abundances from pangenome graph read alignments
  ☆50Updated last week
• josiegleeson / BamSlam
  Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files
  ☆13Updated 9 months ago