epi2me-labs / wf-pore-c
☆38Updated 2 months ago
Alternatives and similar repositories for wf-pore-c:
Users that are interested in wf-pore-c are comparing it to the libraries listed below
- A Nextflow workflow to generate lift over files for any pair of genomes☆64Updated last week
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- A program for assessing the T2T genome continuity☆71Updated last week
- Error correction of ONT transcript reads☆58Updated last year
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆40Updated 5 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆34Updated 4 months ago
- Set of tools to manipulate and visualize modified base bam files☆53Updated 2 years ago
- A tutorial on structural variant calling for short read sequencing data☆32Updated 5 months ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 3 months ago
- Pore-C support☆53Updated 2 years ago
- WDL workflows for variant calling and assembly using ONT☆33Updated last week
- perSVade: personalized Structural Variation detection☆39Updated last month
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆24Updated 9 months ago
- ☆27Updated 2 months ago
- Variant annotation and merging pipeline☆33Updated 2 weeks ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- Structural variant merging tool☆49Updated 7 months ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆22Updated 2 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆100Updated 3 years ago
- ☆47Updated 7 months ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆53Updated 3 months ago
- ☆42Updated 11 months ago
- ☆29Updated 7 months ago
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆48Updated last month
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated this week
- Algorithm to detect germline and de novo transposon insertions☆28Updated this week
- A pipeline for isoseq☆23Updated 6 years ago