epi2me-labs / wf-pore-cView external linksLinks
☆49Nov 24, 2025Updated 2 months ago
Alternatives and similar repositories for wf-pore-c
Users that are interested in wf-pore-c are comparing it to the libraries listed below
Sorting:
- ☆16Aug 14, 2024Updated last year
- An effective alignment tool for long noisy 3C data (e.g. Pore-C and C-walk)☆14Oct 23, 2024Updated last year
- ☆21Jan 13, 2026Updated last month
- a gap-filling tools of genome in complex region.☆24Dec 30, 2025Updated last month
- Ploidy agnostic phasing pipeline and algorithm☆49Jan 3, 2024Updated 2 years ago
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on Pore-C, HiFi-C/CiFi or Hi-C.☆87Jan 25, 2026Updated 3 weeks ago
- A program for assessing the T2T genome continuity☆92Dec 14, 2025Updated 2 months ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆43Nov 25, 2024Updated last year
- ☆119Oct 10, 2025Updated 4 months ago
- test repository☆29Jul 6, 2023Updated 2 years ago
- We developed a protocol of in situ high throughput multi-way contact long read Pore-C sequencing (in situ HiPore-C), a strategy that inte…☆23Mar 17, 2024Updated last year
- Yet another Hi-C scaffolding tool☆170Nov 4, 2024Updated last year
- Neural network classification of TE☆97Oct 9, 2025Updated 4 months ago
- A novel genome assembly pipeline based on deep learning☆68Dec 2, 2024Updated last year
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆38Mar 5, 2023Updated 2 years ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- De novo assembly from Oxford Nanopore reads.☆89Nov 12, 2025Updated 3 months ago
- ☆24Dec 15, 2025Updated 2 months ago
- HELIANO is a software for detection and classification of Helitron-like elements.☆32Jun 10, 2025Updated 8 months ago
- ☆10May 22, 2025Updated 8 months ago
- Telomere compliment tools☆22Nov 17, 2025Updated 2 months ago
- An R package to perform systematic quality checks on comparative genomics analyses☆12Jan 12, 2024Updated 2 years ago
- Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features.☆10Jan 27, 2026Updated 3 weeks ago
- FamDB file format library and utilities☆37Aug 27, 2025Updated 5 months ago
- Domain based annotation of transposable elements☆21Oct 8, 2025Updated 4 months ago
- The MafFilter genome alignment processor☆19Jan 6, 2026Updated last month
- ☆29Feb 5, 2026Updated last week
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆61Aug 28, 2025Updated 5 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69May 22, 2021Updated 4 years ago
- The tools are used for displaying hic signal of genome☆24Jan 4, 2021Updated 5 years ago
- Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…☆109Jan 30, 2026Updated 2 weeks ago
- Discovery of communities in Pore-C concatemers☆15Feb 12, 2025Updated last year
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆53Dec 11, 2025Updated 2 months ago
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆70Mar 23, 2025Updated 10 months ago
- ☆26Mar 23, 2024Updated last year
- A GAN-based method for Enhancing Hi-C data☆33Dec 17, 2020Updated 5 years ago
- ☆14Sep 11, 2023Updated 2 years ago
- Automation of pipelines that depend on preexisting assembly, polishing, and alignment tools. Performance evaluation and visualization of …☆13May 29, 2020Updated 5 years ago
- ☆17Jan 20, 2026Updated 3 weeks ago