☆42May 19, 2025Updated 10 months ago
Alternatives and similar repositories for hypo-assembler
Users that are interested in hypo-assembler are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- The tools are used for displaying hic signal of genome☆25Jan 4, 2021Updated 5 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆38Mar 5, 2023Updated 3 years ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆43Nov 25, 2024Updated last year
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated 10 months ago
- A program for assessing the T2T genome continuity☆92Feb 28, 2026Updated 3 weeks ago
- ☆16Dec 25, 2024Updated last year
- ☆119Oct 10, 2025Updated 5 months ago
- Extracting paths from assembly graphs☆24Apr 26, 2024Updated last year
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆50Feb 9, 2026Updated last month
- ☆16Apr 3, 2023Updated 2 years ago
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆12Nov 6, 2025Updated 4 months ago
- ☆59Dec 12, 2023Updated 2 years ago
- ☆18Jan 29, 2025Updated last year
- Software GMATA for SSR mining, marker designing, genotyping, plot etc.☆17Oct 6, 2025Updated 5 months ago
- A genome assembly assessment pipeline.☆38Nov 20, 2023Updated 2 years ago
- PECAT, a phased error correct and assembly tool☆59Dec 8, 2025Updated 3 months ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated last year
- The complete sequence of a Chinese individual☆12Oct 8, 2024Updated last year
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 3 years ago
- This is a method to find telomeres and centromeres in plants.☆42Jun 17, 2023Updated 2 years ago
- RepeatIdentifier☆72Mar 19, 2025Updated last year
- This is the standalone version of the EviAnn pipeline☆142Mar 13, 2026Updated last week
- Evaluating genome assemblies☆118Mar 3, 2026Updated 3 weeks ago
- HELIANO is a software for detection and classification of Helitron-like elements.☆33Jun 10, 2025Updated 9 months ago
- a gap-filling tools of genome in complex region.☆25Dec 30, 2025Updated 2 months ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- ☆17Jan 14, 2026Updated 2 months ago
- Draw a dot plot from a paf alignment☆38Sep 18, 2025Updated 6 months ago
- Make colorful identity heatmaps of genomic sequence☆128May 24, 2024Updated last year
- Repeat-aware polishing genomes assembled using HiFi long reads☆98Nov 12, 2025Updated 4 months ago
- A genome-scale, fast, and precise segmental duplications mapping tool☆35Sep 11, 2024Updated last year
- base-accurate DNA sequence alignments using WFA and mashmap3☆212Updated this week
- A gap-closing software tool that uses long reads to enhance genome assembly.☆23Apr 25, 2024Updated last year
- Phased structural variant discovery in pangenomes☆40Mar 14, 2026Updated last week
- ☆23Dec 8, 2025Updated 3 months ago
- SRF: Satellite Repeat Finder☆103Jan 8, 2024Updated 2 years ago
- MCHelper: An automatic tool to curate transposable element libraries☆45Jul 3, 2025Updated 8 months ago
- ☆38Oct 6, 2025Updated 5 months ago